BLAST output

CML202C (194 aa)
by blastp 2.2.10 [Oct-19-2004] against nr [Apr-30-2005] (XML result)


		putative splicing factor, arginine/serine-rich [Oryza sativa (japonica cultivar-group)]
		RNA-binding protein [Gloeobacter violaceus PCC 7421]
		PREDICTED: similar to FLJ10251 protein [Homo sapiens]
		putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia]
		LOC494769 protein [Xenopus laevis]
		PREDICTED: similar to Probable RNA-binding protein KIAA0682, partial [Bos taurus]
		similar to ENSANGP00000010223 [Apis mellifera]
		RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
		PREDICTED: similar to FLJ10251 protein [Pan troglodytes]
		putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35) [Oryza sativa (japonica cultivar-group)]
		KIAA0682-like [Danio rerio]
		RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus str. MIT 9313]
		COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
		At5g64200/MSJ1_4 [Arabidopsis thaliana]
		splicing factor SC35 [Arabidopsis thaliana]
		Sfrs2-prov protein [Xenopus laevis]
		unknown protein [Oryza sativa (japonica cultivar-group)]
		unnamed protein product [Mus musculus]
		RNA-binding protein, putative [Trypanosoma brucei]
		hypothetical protein [Gallus gallus]
		PREDICTED: similar to KIAA0682 protein [Canis familiaris]
		nil per os [Danio rerio]
		COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
		ribonucleoprotein [Nicotiana tabacum]
		RNA binding motif protein 19 [Mus musculus]
		Rbm19 protein [Danio rerio]
		unknown protein [Oryza sativa (japonica cultivar-group)]
		PR264/SC35 [Mus musculus]
		putative splicing factor (having alternative splicing products) [Oryza sativa (japonica cultivar-group)]
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		unnamed protein product [Mus musculus]
		RNA binding protein [Nostoc sp. PCC 7120]
		unnamed protein product [Mus musculus]
		CG3335-PA [Drosophila melanogaster]
		SD14970p [Drosophila melanogaster]
		PREDICTED: similar to RBM19 protein [Rattus norvegicus]
		nucleic acid-binding protein - maize
		unnamed protein product [Nicotiana tabacum]
		PREDICTED: similar to FLJ10251 protein [Pan troglodytes]
		31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
		hypothetical protein LOC494445 [Rattus norvegicus]
		Hypothetical protein MGC75633 [Xenopus tropicalis]
		PREDICTED: similar to Rbm28 protein [Rattus norvegicus]
		PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein..., partial [Bos taurus]
		PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein... [Canis familiaris]
		RNA-binding protein precursor [Persea americana]
		PREDICTED: similar to RNA binding motif protein 19 [Gallus gallus]
		RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
		unnamed protein product [Mus musculus]
		cp31AHv protein [Hordeum vulgare subsp. vulgare]
		33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
		unnamed protein product [Tetraodon nigroviridis]
		unnamed protein product [Mus musculus]
		ENSANGP00000010223 [Anopheles gambiae str. PEST]
		RNA-binding protein [Gloeobacter violaceus PCC 7421]
		similar to Splicing factor, arginine/serine-rich, 46kD [Homo sapiens]
		COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
		RNA-binding protein [Thermosynechococcus elongatus BP-1]
		splicing factor arginine/serine rich 2 [Oryzias latipes]
		Hypothetical protein CBG19017 [Caenorhabditis briggsae]
		putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
		Zgc:56283 [Danio rerio]
		neural specific sr protein NSSR 2 [Mus musculus]
		FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
		RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
		COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
		FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
		RNA-binding protein [Schistosoma japonicum]
		RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus sp. WH 8102]
		Unknown (protein for IMAGE:7074336) [Danio rerio]
		Splicing factor, arginine/serine-rich 2 (SC-35) [Danio rerio]
		RNA binding protein [Thermosynechococcus elongatus BP-1]
		PREDICTED: similar to TLS-associated protein TASR-2 [Pan troglodytes]
		splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
		Zgc:55876 protein [Danio rerio]
		RbpD [Nostoc sp. PCC 7120]
		PREDICTED: similar to TLS-associated protein TASR-2, partial [Bos taurus]
		COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
		CEBP-1 [Dianthus caryophyllus]
		Hypothetical protein CBG03493 [Caenorhabditis briggsae]
		FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
		hypothetical protein PF14_0433 [Plasmodium falciparum 3D7]
		Hypothetical protein T23F6.4 [Caenorhabditis elegans]
		PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein... [Rattus norvegicus]
		RNA-binding protein - common ice plant
		putative Serine/arginine rich protein [Arabidopsis thaliana]
		arginine/serine-rich 2 splicing factor [Pan troglodytes]
		FUSIP1 protein [Homo sapiens]
		Rbm28 protein [Mus musculus]
		splicing factor
		RNA-binding protein RbpC - Anabaena variabilis (fragment)
		Ps16 protein - wheat
		unnamed protein product [Yarrowia lipolytica CLIB99]
		unnamed protein product [Nicotiana sylvestris]
		CG5442-PB, isoform B [Drosophila melanogaster]
		28 kDa ribonucleoprotein, chloroplast (28RNP)
		similar to Splicing factor, arginine/serine-rich, 46kD [Homo sapiens]
		chloroplast RNA binding protein [Phaseolus vulgaris]
		unnamed protein product [Homo sapiens]
		28kD RNA binding protein [Spinacia oleracea]
		RNA-binding protein [Nostoc sp. PCC 7120]
		COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		PR 264 [Gallus gallus]
		PIP-1 [Caenorhabditis elegans]
		RNA-binding protein, 28K - spinach
		PREDICTED: similar to TLS-associated protein TASR-2, partial [Bos taurus]
		unnamed protein product [Debaryomyces hansenii CBS767]
		RNA binding protein, putative [Plasmodium falciparum 3D7]
		RNA-binding protein [Synechocystis sp. PCC 6803]
		PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Pan troglodytes]
		glycine-rich RNA-binding protein [Physcomitrella patens]
		Non-POU domain containing, octamer-binding [Danio rerio]
		Ncbp2 protein [Danio rerio]
		Hypothetical protein CBG02383 [Caenorhabditis briggsae]
		hypothetical protein UM02346.1 [Ustilago maydis 521]
		hypothetical protein [Homo sapiens]
		RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		RBM19 protein [Homo sapiens]
		GA18884-PA [Drosophila pseudoobscura]
		putativeRNA-binding protein RbpD [Synechococcus sp. WH 8102]
		eIF3-p44 [Mus musculus]
		Homo sapiens nuclear cap binding protein subunit 2, 20kDa [synthetic construct]
		RNA-binding protein precursor [Persea americana]
		Probable RNA-binding protein KIAA0682
		KIAA0682 protein [Homo sapiens]
		PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Canis familiaris]
		PREDICTED: similar to neural specific sr protein NSSR 1 [Gallus gallus]
		PREDICTED: similar to PR264/SC35 [Homo sapiens]
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
		nuclear cap binding protein subunit 2 [Mus musculus]
		ENSANGP00000015053 [Anopheles gambiae str. PEST]
		Nuclear cap binding protein subunit 2, 20kDa [Xenopus tropicalis]
		neural specific sr protein NSSR 1 [Mus musculus]
		hypothetical protein [Pongo pygmaeus]
		FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
		unnamed protein product [Yarrowia lipolytica CLIB99]
		FUS interacting protein (serine-arginine rich) 1 isoform 2 variant [Homo sapiens]
		conserved hypothetical protein [Plasmodium chabaudi]
		SC35-like splicing factor, 28 kD (SCL28) [Arabidopsis thaliana]
		PREDICTED: similar to PTDSR protein [Canis familiaris]
		FUS interacting protein (serine-arginine rich) 1 isoform 2 [Homo sapiens]
		RNA-binding protein, putative [Trypanosoma brucei]
		hypothetical protein DDB0186128 [Dictyostelium discoideum]
		ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana, putative [Plasmodium yoelii yoelii]
		OSJNBa0070C17.5 [Oryza sativa (japonica cultivar-group)]
		similar to SD14970p [Apis mellifera]
		unnamed protein product [Tetraodon nigroviridis]
		cp31 [Arabidopsis thaliana]
		RNA-binding protein precursor [Solanum tuberosum]
		RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
		cp31 [Arabidopsis thaliana]
		unknown [Prosthecobacter dejongeii]
		cp31BHv [Hordeum vulgare subsp. vulgare]
		unnamed protein product [Candida glabrata CBS138]
		RNA-binding protein 3
		At4g24770/F22K18_30 [Arabidopsis thaliana]
		Unknown (protein for MGC:80352) [Xenopus laevis]
		RNA-binding protein like [Arabidopsis thaliana]
		RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
		RNA-binding protein-like [Arabidopsis thaliana]
		PREDICTED: similar to cytosine-5-methyltransferase [Canis familiaris]
		MGC53149 protein [Xenopus laevis]
		putative glycine-rich RNA-binding protein [Guillardia theta]
		RNA binding protein, putative [Plasmodium berghei]
		PREDICTED: similar to Splicing factor, arginine/serine-rich, 46kD [Pan troglodytes]
		hypothetical protein AN6722.2 [Aspergillus nidulans FGSC A4]
		hypothetical protein LOC549503 [Xenopus tropicalis]
		paraspeckle component 1 [Homo sapiens]
		RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
		RE44625p [Drosophila melanogaster]
		Eif3s4-prov protein [Xenopus laevis]
		ss-DNA binding protein 12RNP2 precursor [Synechococcus sp. PCC 6301]
		Chain A, Solution Structure Of The N-Terminal Rna Binding Domain From Hypothetical Protein Bab23448
		SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana]
		RNA-binding protein 2
		hypothetical protein [Gallus gallus]
		RNA-binding protein [Synechococcus sp. WH 8102]
		Hypothetical LOC496509 [Xenopus tropicalis]
		unnamed protein product [Homo sapiens]
		RNA binding protein [Synechocystis sp. PCC 6803]
		unnamed protein product [Arabidopsis thaliana]
		PSPC1 [Homo sapiens]
		unnamed protein product [Tetraodon nigroviridis]
		NCBP interacting protein 1 [Homo sapiens]
		Hypothetical protein F26A3.2 [Caenorhabditis elegans]
		Sr protein (splicing factor) protein 4, isoform b [Caenorhabditis elegans]
		RNA-binding protein [Anabaena variabilis]
		Chain Z, Nuclear Cap Binding Complex
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		RBD protein [Chironomus tentans]
		dentin phosphoryn [Plasmodium yoelii yoelii]
		RNA-binding protein RGP-3 - wood tobacco (fragment)
		glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
		RNA-binding protein precursor [Nicotiana tabacum]
		Fusip1 protein [Mus musculus]
		RNA binding protein [Arabidopsis thaliana]
		Hypothetical protein MGC65772 [Danio rerio]
		hypothetical protein 37.t00027 [Entamoeba histolytica HM-1:IMSS]
		PSPC1 protein [Homo sapiens]
		12RNP2 protein - Synechococcus sp. (PCC 6301)
		MGC83338 protein [Xenopus laevis]
		Sr protein (splicing factor) protein 4, isoform a [Caenorhabditis elegans]
		putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
		Hypothetical protein MGC56258 [Danio rerio]
		COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
		RNA-binding protein RbpD - Anabaena variabilis (fragment)
		translation initiation factor 3, subunit g (eIF3g) [Arabidopsis thaliana]
		eukaryotic translation initiation factor 3, subunit 4 (delta) [Mus musculus]
		DNA-binding protein - Arabidopsis thaliana
		COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
		Homo sapiens eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [synthetic construct]
		PREDICTED: similar to cold inducible RNA binding protein; cold inducible RNA-binding protein; glycine-rich RNA binding protein; Cold-inducible RNA-binding protein, partial [Gallus gallus]
		unnamed protein product [Tetraodon nigroviridis]
		EIF3S4 [Homo sapiens]
		eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Homo sapiens]
		unnamed protein product [Tetraodon nigroviridis]
		PREDICTED: similar to paraspeckle protein 1 alpha isoform [Pan troglodytes]
		nuclear cap binding protein subunit 2 [Danio rerio]
		Hypothetical protein CBG22194 [Caenorhabditis briggsae]
		putative eukaryotic translation initiation factor 3 subunit [Arabidopsis thaliana]
		unnamed protein product [Tetraodon nigroviridis]
		eukaryotic translation initiation factor 3, subunit 4 (delta) (predicted) [Rattus norvegicus]
		Ab1-210 [Rattus norvegicus]
		RNA-binding protein [Gloeobacter violaceus PCC 7421]
		hypothetical protein PF14_0096 [Plasmodium falciparum 3D7]
		ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
		At4g13860 [Arabidopsis thaliana]
		PREDICTED: similar to peptidylprolyl isomerase E [Gallus gallus]
		eukaryotic translation initiation factor 3 subunit 4 [Danio rerio]
		unknown [Gemmata sp. Wa1-1]
		PREDICTED: similar to peptidylprolyl isomerase E [Rattus norvegicus]
		peptidylprolyl isomerase E [Mus musculus]
		RNA-binding protein - wood tobacco
		RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
		glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
		PREDICTED: similar to 35 kDa SR repressor protein (SRrp35) [Rattus norvegicus]
		RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)]
		putative RNA-binding protein [Bacteroides fragilis YCH46]
		CG12357-PA [Drosophila melanogaster]
		Putative RNA-binding protein [Oryza sativa]
		cp33 [Arabidopsis thaliana]
		unknown protein [Oryza sativa (japonica cultivar-group)]
		hypothetical protein CNBG1820 [Cryptococcus neoformans var. neoformans B-3501A]
		cyclophilin [Takifugu rubripes]
		RNA-binding protein cp33 precursor [Arabidopsis thaliana]
		PREDICTED: similar to paraspeckle protein 1 [Bos taurus]
		cyclophilin-33A [Homo sapiens]
		hypothetical protein AN0421.2 [Aspergillus nidulans FGSC A4]
		peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
		RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
		putative RNA-binding protein RNP-D precursor [Oryza sativa (japonica cultivar-group)]
		enhancer binding protein 2 [Entamoeba histolytica HM-1:IMSS]
		paraspeckle component 1 [Homo sapiens]
		RNA binding protein 30 [Nicotiana plumbaginifolia]
		RNA-binding protein
		similar to ENSANGP00000015053 [Apis mellifera]
		RBM9 protein [Homo sapiens]
		hypothetical protein [Pongo pygmaeus]
		peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
		PREDICTED: similar to RBM9 [Canis familiaris]
		mRNA processing protein, putative [Plasmodium berghei]
		putative RNA-binding protein rbpA [Bacteroides thetaiotaomicron VPI-5482]
		RBM9 [Homo sapiens]
		similar to CG12357-PA [Apis mellifera]
		Serine-arginine repressor protein (35 kDa) [Homo sapiens]
		hypothetical protein [Gallus gallus]
		RNA-binding protein, putative [Plasmodium falciparum 3D7]
		SRrp35 [Homo sapiens]
		nucleic acid-binding protein-like [Oryza sativa (japonica cultivar-group)]
		CAP binding protein [Xenopus laevis]
		RNA binding motif protein 9 [Homo sapiens]
		29kD A ribonucleoprotein [Nicotiana sylvestris]
		Paraspeckle protein 1 [Mus musculus]
		RNA binding protein 3 - wood tobacco
		hypothetical protein LOC422214 [Gallus gallus]
		PREDICTED: similar to ataxin 2-binding protein 1 isoform 2 [Rattus norvegicus]
		unnamed protein product [Tetraodon nigroviridis]
		RNA-binding protein, putative [Plasmodium chabaudi]
		hexaribonucleotide binding protein 1 isoform beta [Homo sapiens]
		PREDICTED: similar to Paraspeckle protein 1 [Rattus norvegicus]
		paraspeckle protein 1 [Mus musculus]
		SRP46 protein [Homo sapiens]
		SRp46 splicing factor [Homo sapiens]
		ataxin-2 binding protein 1 variant 4 [Mus musculus]
		eukaryotic translation initiation factor 3 subunit like protein [Arabidopsis thaliana]
		PREDICTED: similar to hexaribonucleotide binding protein 1 [Rattus norvegicus]
		ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana-related [Plasmodium yoelii yoelii]
		AFR107Wp [Ashbya gossypii ATCC 10895]
		hypothetical protein [Gallus gallus]
		RNA-binding protein, putative [Plasmodium berghei]
		BFCIRP [Rana catesbeiana]
		PREDICTED: similar to ataxin 2-binding protein 1 isoform 4; hexaribonucleotide binding protein 1 [Homo sapiens]
		no-on transient A-like protein
		Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From Trypanosoma Cruzi
		peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
		PREDICTED: similar to peptidylprolyl isomerase E isoform 2; peptidyl-prolyl cis-trans isomerase E; cyclophilin 33; cyclophilin E; PPIase E; rotamase E [Pan troglodytes]
		hexaribonucleotide binding protein 1 isoform gamma [Homo sapiens]
		ataxin-2 binding protein 1 variant 3 [Mus musculus]
		RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
		hypothetical protein CNA02490 [Cryptococcus neoformans var. neoformans JEC21]
		glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
		COG0724: RNA-binding proteins (RRM domain) [Moorella thermoacetica ATCC 39073]
		UBP1 interacting protein 2a [Plasmodium yoelii yoelii]
		SRp46 splicing factor [Homo sapiens]
		CG10328-PA [Drosophila melanogaster]
		hexaribonucleotide binding protein 1 isoform alpha [Homo sapiens]
		ataxin 2 binding protein 1 isoform alpha [Mus musculus]
		SFRS2 protein [Homo sapiens]
		RNA-binding protein - Anabaena sp
		COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
		Hypothetical protein CBG05376 [Caenorhabditis briggsae]
		GA11577-PA [Drosophila pseudoobscura]
		putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
		ataxin 2-binding protein [Homo sapiens]
		unnamed protein product [Homo sapiens]
		hypothetical protein [Pongo pygmaeus]
		RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
		ataxin-2 binding protein 1 variant 2 [Mus musculus]
		hypothetical protein [Neurospora crassa]
		RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
		putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza sativa (japonica cultivar-group)]
		hypothetical protein CaO19.9215 [Candida albicans SC5314]
		enhancer binding protein-2; EBP2 [Entamoeba histolytica]
		hypothetical protein CaO19.1646 [Candida albicans SC5314]
		RNA-binding protein [Anabaena variabilis]
		glycine-rich RNA-binding protein 8 (GRP8) (CCR1) [Arabidopsis thaliana]
		glycine rich protein [Arabidopsis thaliana]
		hypothetical protein FG11064.1 [Gibberella zeae PH-1]
		24 kDa RNA binding protein
		unnamed protein product [Arabidopsis thaliana]
		Ataxin 2 binding protein 1, isoform gamma [Mus musculus]
		unnamed protein product [Mus musculus]
		hypothetical protein [Pongo pygmaeus]
		translation initiation factor eIF3 p44 subunit [Homo sapiens]
		ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
		unnamed protein product [Homo sapiens]
		ss-DNA binding protein 12RNP2 precursor [Helicobacter pylori 26695]
		ataxin 2 binding protein 1 isoform gamma [Mus musculus]
		similar to ENSANGP00000021554 [Apis mellifera]
		MGC89658 protein [Xenopus tropicalis]
		eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
		hypothetical protein LOC549982 [Xenopus tropicalis]
		ataxin 2-binding protein variant 1 [Homo sapiens]
		Unknown (protein for MGC:87185) [Homo sapiens]
		unnamed protein product [Mus musculus]
		COG0724: RNA-binding proteins (RRM domain) [Polaromonas sp. JS666]
		PREDICTED: DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
		Similar to eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Danio rerio]
		LOC495068 protein [Xenopus laevis]
		putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
		RNA-binding protein RbpD [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
		glycine-rich RNA-binding protein 8 (GRP8) (CCR1) [Arabidopsis thaliana]
		hyperosmotic glycine rich protein [Salmo salar]
		eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
		hypothetical protein jhp0766 [Helicobacter pylori J99]
		RNA-binding protein [Geobacter sulfurreducens PCA]
		CG4886-PA [Drosophila melanogaster]
		RNA binding protein [Bacteroides fragilis]
		hypothetical protein FG03841.1 [Gibberella zeae PH-1]
		Ypr112cp [Saccharomyces cerevisiae]
		ENSANGP00000023706 [Anopheles gambiae str. PEST]
		unknown [Schistosoma japonicum]
		Hypothetical protein CBG05375 [Caenorhabditis briggsae]
		COG0724: RNA-binding proteins (RRM domain) [Cytophaga hutchinsonii]
		hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
		Unknown (protein for MGC:112471) [Danio rerio]
		putative protein [Arabidopsis thaliana]
		unnamed protein product [Mus musculus]
		U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi]
		COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
		splicing factor RRM domain containing protein; T22E16.120 SC35-like splicing factor [Cryptosporidium parvum]
		RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
		cp33Hv [Hordeum vulgare subsp. vulgare]
		hypothetical protein [Pongo pygmaeus]
		glycine-rich RNA-binding protein, low-temperature-responsive - barley
		hypothetical protein [Homo sapiens]
		RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
		PREDICTED: hypothetical protein XP_535833 [Canis familiaris]
		putative RNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
		unknown [Gemmata sp. Wa1-1]
		putative protein [Arabidopsis thaliana]
		conserved hypothetical protein [Plasmodium chabaudi]
		glycine-rich RNA-binding protein (GRP2) [Arabidopsis thaliana]
		glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
		RNA-binding protein UBP-2 [Trypanosoma cruzi]
		putative ribonucleoprotein [Oryza sativa]
		cold inducible RNA-binding protein alpha [Hyla japonica]
		ribonucleoprotein [Pisum sativum]
		GA18502-PA [Drosophila pseudoobscura]
		putative RNA-binding protein [Bacteroides fragilis YCH46]
		RNA binding protein [Bacteroides fragilis YCH46]
		CG5213-PA [Drosophila melanogaster]
		hypothetical protein [Macaca fascicularis]
		putative RNA-binding protein RNP1 precursor [Oryza sativa (japonica cultivar-group)]
		AtGRP2 [Arabidopsis thaliana]
		similar to sex-lethal [Apis mellifera]
		Rbm9-prov protein [Xenopus tropicalis]
		conserved hypothetical protein [Plasmodium berghei]
		putative RNA-binding protein [Acinetobacter sp. ADP1]
		cold inducible RNA-binding protein beta [Hyla japonica]
		unnamed protein product [Candida glabrata CBS138]
		unknown protein [Arabidopsis thaliana]
		ENSANGP00000003826 [Anopheles gambiae str. PEST]
		hypothetical protein DDB0218899 [Dictyostelium discoideum]
		RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
		GH07919p [Drosophila melanogaster]
		Xcirp2 protein [Xenopus laevis]
		unknown [Arabidopsis thaliana]
		sex-lethal [Bradysia coprophila]
		Ser/Arg-rich splicing factor, putative [Plasmodium berghei]
		RNA-binding protein UBP-1 [Trypanosoma cruzi]
		Hypothetical protein CBG20166 [Caenorhabditis briggsae]
		splicing factor, putative [Plasmodium berghei]
		unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
		ENSANGP00000005999 [Anopheles gambiae str. PEST]
		putative arginine/serine-rich splicing factor [Arabidopsis thaliana]
		PREDICTED: similar to PTB-associated splicing factor [Gallus gallus]
		putative nucleic acid-binding protein [Arabidopsis thaliana]
		putative RNA binding protein [Brugia malayi]
		sex-lethal [Sciara ocellaris]
		sex-lethal [Rhynchosciara americana]
		RNA-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]
		CG5119-PH, isoform H [Drosophila melanogaster]
		NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
		Homo sapiens cold inducible RNA binding protein [synthetic construct]
		Hypothetical protein R74.5a [Caenorhabditis elegans]
		ENSANGP00000020835 [Anopheles gambiae str. PEST]
		glycine-rich RNA-binding protein [Arabidopsis thaliana]
		putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
		hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
		Elavl4 protein [Mus musculus]
		cap-binding protein [Mirabilis jalapa]
		CG3151-PF, isoform F [Drosophila melanogaster]
		RNA-binding protein, putative [Trypanosoma brucei]
		PREDICTED: similar to cold inducible RNA binding protein [Canis familiaris]
		CG3151-PC, isoform C [Drosophila melanogaster]
		Ser/Arg-rich splicing factor, putative [Plasmodium chabaudi]
		NSR1 [Saccharomyces cerevisiae]
		RNA-binding protein [Rhodopirellula baltica SH 1]
		cold inducible RNA binding protein [Homo sapiens]
		RRM9 [Drosophila melanogaster]
		Cirbp protein [Danio rerio]
		cold-inducible RNA binding protein [Cricetulus griseus]
		hypothetical protein PC000170.04.0 [Plasmodium chabaudi]
		RRM domain containing protein; T22E16.120 Sc35-like splicing factor [Cryptosporidium parvum]
		transformer-2-beta isoform 3, putative [Cryptococcus neoformans var. neoformans JEC21]
		hypothetical protein CNBC1090 [Cryptococcus neoformans var. neoformans B-3501A]
		ADR035Cp [Ashbya gossypii ATCC 10895]
		glycine rich RNA binding protein [Ciona intestinalis]
		POLYADENYLATE BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
		arginine/serine-rich splicing factor, putative [Arabidopsis thaliana]
		single-stranded DNA binding protein precursor [Solanum tuberosum]
		PREDICTED: similar to RNA binding motif protein 28 [Canis familiaris]
		OTTHUMP00000028771 [Homo sapiens]
		Hypothetical protein YPR112c [Schizosaccharomyces pombe]
		Hypothetical protein F25B5.7d [Caenorhabditis elegans]
		conserved hypothetical protein [Plasmodium berghei]
		sex-lethal [Trichomegalosphys pubescens]
		cold inducible RNA binding protein [Rattus norvegicus]
		unnamed protein product [Homo sapiens]
		hypothetical protein [Legionella pneumophila str. Paris]
		Similar to splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) [Danio rerio]
		glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
		unnamed protein product [Tetraodon nigroviridis]
		ENSANGP00000013045 [Anopheles gambiae str. PEST]
		PREDICTED: similar to 54 kDa nuclear RNA- and DNA-binding protein (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (Non-POU domain-containing octamer-binding protein) (DNA-binding P52/P100 complex, 52 kDa subunit), partial [Bos taurus]
		COG0724: RNA-binding proteins (RRM domain) [Geobacter metallireducens GS-15]
		putative RNA binding motif protein [Oryza sativa (japonica cultivar-group)]
		similar to ENSANGP00000018039 [Apis mellifera]
		ataxin 2-binding protein 1 isoform 4 variant [Homo sapiens]
		RNA-binding protein, putative [Trypanosoma brucei]
		ENSANGP00000023038 [Anopheles gambiae str. PEST]
		putative RNA-binding protein [Arabidopsis thaliana]
		LOC414671 protein [Xenopus laevis]
		unnamed protein product [Yarrowia lipolytica CLIB99]
		COG0724: RNA-binding proteins (RRM domain) [Polaromonas sp. JS666]
		DAZ associated protein 1 [Homo sapiens]
		enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
		PREDICTED: similar to squamous cell carcinoma antigen recognized by T cells 3; tat-interacting protein of 110 kDa [Gallus gallus]
		PREDICTED: similar to RNA-binding protein 28 (RNA binding motif protein 28), partial [Bos taurus]
		hypothetical protein LOC403096 [Xenopus tropicalis]
		PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Gallus gallus]
		putative RNA-binding protein [Arabidopsis thaliana]
		RNA-binding protein, putative [Trypanosoma brucei]
		DAZ associated protein 1 isoform a [Homo sapiens]
		unnamed protein product [Mus musculus]
		splicing factor, putative [Plasmodium falciparum 3D7]
		Efna2-prov protein [Xenopus laevis]
		CG4396-PA [Drosophila melanogaster]
		CG3151-PD, isoform D [Drosophila melanogaster]
		RNA binding protein, cold-inducible rrm [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
		COG0724: RNA-binding proteins (RRM domain) [Rubrivivax gelatinosus PM1]
		Unknown (protein for MGC:39946) [Homo sapiens]
		unnamed protein product [Yarrowia lipolytica CLIB99]
		CG3151-PA, isoform A [Drosophila melanogaster]
		eukaryotic translation initiation factor 3 p42 [Platichthys flesus]
		transformer-2 beta [Gallus gallus]

ref|XP_483049.1| putative splicing factor, arginine/serine-rich [Oryza sativa (japonica cultivar-group)]
ref|XP_507274.1| PREDICTED P0481F05.17 gene product [Oryza sativa (japonica cultivar-group)]
dbj|BAD09319.1| putative splicing factor, arginine/serine-rich [Oryza sativa (japonica cultivar-group)]
(289 aa)

Score: 64 bits (156), Expect: 1.44024e-09
Length: 98, Idn/Pos/Gap = 40/58/0 (40%/59%/0%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R    +++++  L+V NI F T  +DL  LF  YG V+D+FIP DR+    RGFAFVR +
Sbjct:   6 RSGPPDIRDTFSLLVLNISFRTTADDLFPLFDRYGKVVDVFIPRDRRTGDSRGFAFVRYK  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQ 156
             E+A+ AI  LDG  +  R I V+ A+Y     P+ +
Sbjct:  66 YAEEAQKAIDRLDGRNVDGRNIMVQFAKYGPNAEPIRK 103

ref|NP_924337.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
dbj|BAC89332.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
(122 aa)

Score: 62 bits (149), Expect: 9.57197e-09
Length: 76, Idn/Pos/Gap = 34/48/0 (44%/63%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF   +++++E F  YG+V  + IP DR+  R RGFAFV L++    +AAI  L
Sbjct:   3 LFVGNLPFSATEQEIVEAFTEYGEVKSVKIPMDRETGRPRGFAFVDLESETAEQAAIDDL  62

Query: 131 DGSTMRERIIAVKRAE 146
           DG+T   R I V +AE
Sbjct:  63 DGATWNNREIRVNKAE  78

ref|XP_372429.3| PREDICTED: similar to FLJ10251 protein [Homo sapiens]
(801 aa)

Score: 61 bits (148), Expect: 1.12163e-08
Length: 119, Idn/Pos/Gap = 41/59/1 (34%/49%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct: 576 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDA 635

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRR 182
           + A AA+DG+ + ER + V+ A Y R + P S       GR    R  RRS     R R
Sbjct: 636 QDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQE-EPRGRSWGGRYGRRSGSPRGRHR 693

emb|CAA76346.1| putative arginine/serine-rich splicing factor [Medicago sativa subsp. x varia]
pir||T09704 probable arginine/serine-rich splicing factor - alfalfa
(286 aa)

Score: 60 bits (145), Expect: 2.35697e-08
Length: 89, Idn/Pos/Gap = 38/53/0 (42%/59%/0%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R    ++ ++  L+V NI F T  +DL  LF  YG V+DIFIP DR+    RGFAFVR +
Sbjct:   6 RSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYK  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
             ++A  A+  LDG  +  R I V+ A+Y
Sbjct:  66 YADEASKAVDRLDGRMVDGREITVQFAKY  94

gb|AAH82875.1| LOC494769 protein [Xenopus laevis]
(920 aa)

Score: 60 bits (144), Expect: 3.37421e-08
Length: 112, Idn/Pos/Gap = 38/56/9 (33%/50%/8%)

Query:  53 SRPFPNRP----SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRR 108
           SRP+  R      + +L  S  L VRN+P+   ++DL +LF  YG + +I  P D   ++
Sbjct: 366 SRPWEQRDKQELQQEDLSESGRLFVRNLPYSCTEDDLDKLFSKYGPISEIHFPIDSLTKK 425

Query: 109 IRGFAFVRLQTLEQAEAAIAALDGSTMRERII-----AVKRAEYERGEGPVS 155
            +GFAFV     E A  A A +DG   + R++     A K+ E    EG  S
Sbjct: 426 PKGFAFVTFLITEHAVKAYAEVDGQIFQGRLLHVLPSAAKKEEVNESEGDAS 477

ref|XP_583618.1| PREDICTED: similar to Probable RNA-binding protein KIAA0682, partial [Bos taurus]
(370 aa)

Score: 60 bits (144), Expect: 3.57715e-08
Length: 98, Idn/Pos/Gap = 35/52/0 (35%/53%/0%)

Query:  45 QGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           +  AKP   R       E +L +S  L VRN+P+ + +EDL +LF  YG V ++  P D 
Sbjct: 156 KNGAKPWQGRTLGEHEEEEDLADSGRLFVRNLPYTSSEEDLEKLFSRYGPVSELHYPIDS 215

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
             ++ +GFAFV     E A  A A +DG   + R++ V
Sbjct: 216 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 253

ref|XP_393352.1| similar to ENSANGP00000010223 [Apis mellifera]
(232 aa)

Score: 59 bits (143), Expect: 4.87093e-08
Length: 85, Idn/Pos/Gap = 37/47/0 (43%/55%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           V L V N+ + T  EDL  +F   G+V DI+IP DR  R  RGFAFVR      AE A+ 
Sbjct:  14 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRFTRESRGFAFVRFYDKRDAEDALD  73

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
           A+DG  +  R + V+ A Y R   P
Sbjct:  74 AMDGRLLDGRELRVQMARYGRPTSP  98

ref|NP_892134.1| RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
emb|CAE18472.1| RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
(221 aa)

Score: 58 bits (141), Expect: 6.41493e-08
Length: 83, Idn/Pos/Gap = 31/50/0 (37%/60%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++  V + V N+PF   +ED+LELF PYG+V++  +P +R   R RGFAFV +      
Sbjct:  17 KVEFQVSIFVGNLPFRAEREDILELFTPYGEVMNCSLPLERDTGRKRGFAFVEMADEALE  76

Query: 124 EAAIAALDGSTMRERIIAVKRAE 146
            +AI  L G+ +  R + + +AE
Sbjct:  77 TSAIDGLQGTELMGRPLRINKAE  99

ref|XP_522155.1| PREDICTED: similar to FLJ10251 protein [Pan troglodytes]
(756 aa)

Score: 58 bits (140), Expect: 8.88207e-08
Length: 138, Idn/Pos/Gap = 44/66/16 (31%/47%/11%)

Query:  32 SPSGATLIGETTEQGAAKPKS---SRPFPNRPS---------ESELQNSVGLMVRNIPFG  79
           SP GA    +  E+ A +P S   S  F  R +           ++   + L V N+ + 
Sbjct: 446 SPRGA----QPQERNAGRPTSAQRSASFQARAALGAMSCGRPPPDVDGMITLKVDNLTYR 501

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
           T  + L  +F  YG V D++IP +   +  RGFAFVR      A+ A AA+DG+ + ER 
Sbjct: 502 TSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDAQDAEAAMDGAVLDERE 561

Query: 140 IAVKRAEYERGEGPVSQH 157
           + V+ A Y R + P S  
Sbjct: 562 LRVRMARYGRRDLPRSSQ 579

ref|XP_479195.1| putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35) [Oryza sativa (japonica cultivar-group)]
dbj|BAC79909.1| putative splicing factor, arginine/serine-rich 2 (Splicing factor SC35) [Oryza sativa (japonica cultivar-group)]
(275 aa)

Score: 57 bits (137), Expect: 2.04587e-07
Length: 89, Idn/Pos/Gap = 37/55/0 (41%/61%/0%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R     ++++  L+V NI F T  +DL  LF  YG+V+DI+IP DR+    RGFAFVR +
Sbjct:   6 RSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFAFVRYK  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
             ++A+ A+  LDG  +  R I V+ A+Y
Sbjct:  66 YEDEAQKAVDRLDGRVVDGREIMVQFAKY  94

gb|AAT68091.1| KIAA0682-like [Danio rerio]
(927 aa)

Score: 56 bits (136), Expect: 2.67199e-07
Length: 79, Idn/Pos/Gap = 28/47/0 (35%/59%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+P+   +EDL ELF  +G + ++  P D   ++ +GFAFV     E A +A+A L
Sbjct: 401 LFIRNMPYTCTEEDLKELFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG T + R++ V  +  ++
Sbjct: 461 DGHTFQGRVLHVMASRLKK 479

emb|CAE20189.1| RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus str. MIT 9313]
ref|NP_893847.1| RNA-binding region RNP-1 (RNA recognition motif) [Prochlorococcus marinus str. MIT 9313]
(199 aa)

Score: 56 bits (136), Expect: 3.00308e-07
Length: 85, Idn/Pos/Gap = 35/50/1 (41%/58%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+PF   QED++ELF P+G+V +  +P +R   R RGFAFV +       AAI 
Sbjct:   1 MSIFVGNLPFRAEQEDVIELFAPFGEVANCALPLERDTGRKRGFAFVEMADESAEPAAIE  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
           AL G+ M  R + + +AE  RG  P
Sbjct:  61 ALQGAEMMGRPLRINKAE-PRGSAP  84

ref|ZP_00176683.1| COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
(94 aa)

Score: 56 bits (135), Expect: 3.2644e-07
Length: 84, Idn/Pos/Gap = 31/49/0 (36%/58%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   +EDL E+F  YG V  + IP DR+  R+RGFAFV + + +Q + AI+
Sbjct:   1 MSIYVGNLSYDVNKEDLEEVFTEYGSVKRVHIPKDRESGRMRGFAFVEMDSDDQEQEAIS  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEG 152
            LDG+    R + V +A+     G
Sbjct:  61 TLDGAEWMGRTLKVNKAKEREPRG  84

gb|AAN28790.1| At5g64200/MSJ1_4 [Arabidopsis thaliana]
gb|AAM67450.1| unknown protein [Arabidopsis thaliana]
gb|AAL36246.1| unknown protein [Arabidopsis thaliana]
gb|AAM83231.1| AT5g64200/MSJ1_4 [Arabidopsis thaliana]
dbj|BAB09851.1| unnamed protein product [Arabidopsis thaliana]
ref|NP_201225.1| arginine/serine-rich splicing factor SC35 [Arabidopsis thaliana]
ref|NP_851261.1| arginine/serine-rich splicing factor SC35 [Arabidopsis thaliana]
(303 aa)

Score: 56 bits (135), Expect: 3.29175e-07
Length: 89, Idn/Pos/Gap = 37/53/0 (41%/59%/0%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R    ++ ++  L+V NI F T  +DL  LF  YG V+D+FIP DR+    RGFAFVR +
Sbjct:   6 RSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYK  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
             ++A  A+  LDG  +  R I V+ A+Y
Sbjct:  66 YKDEAHKAVERLDGRVVDGREITVQFAKY  94

emb|CAC03600.1| splicing factor SC35 [Arabidopsis thaliana]
(303 aa)

Score: 56 bits (135), Expect: 3.34714e-07
Length: 89, Idn/Pos/Gap = 37/53/0 (41%/59%/0%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R    ++ ++  L+V NI F T  +DL  LF  YG V+D+FIP DR+    RGFAFVR +
Sbjct:   6 RSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYK  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
             ++A  A+  LDG  +  R I V+ A+Y
Sbjct:  66 YKDEAHKAVERLDGRVVDGREITVQFAKY  94

gb|AAH45229.1| Sfrs2-prov protein [Xenopus laevis]
(215 aa)

Score: 56 bits (135), Expect: 3.73062e-07
Length: 110, Idn/Pos/Gap = 43/59/9 (39%/53%/8%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRR 173
           E A+ A+DG+ +  R + V+ A Y  G  P S H     GRRG +  PRR
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH-----GRRGPA--PRR 109

gb|AAU10777.1| unknown protein [Oryza sativa (japonica cultivar-group)]
(116 aa)

Score: 56 bits (135), Expect: 4.08923e-07
Length: 86, Idn/Pos/Gap = 27/53/3 (31%/61%/3%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           ++V  +    +++DL  +FR +G V ++ +  DR+   ++G+A +  +T E+A+AAI AL
Sbjct:  15 VLVTGVHEEAQEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKAL  74

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQ 156
           DG+ +  +II+V   ++    GPV +
Sbjct:  75 DGTELLTQIISV---DWAFSNGPVKR  97

dbj|BAB23448.1| unnamed protein product [Mus musculus]
(590 aa)

Score: 56 bits (135), Expect: 4.12349e-07
Length: 124, Idn/Pos/Gap = 36/64/5 (29%/51%/4%)

Query:  50 PKSSRPFPNRP-----SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           PKS+ P+  R       E +L +S  L VRN+ + + +EDL +LF  YG + ++  P D 
Sbjct:  14 PKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS  73

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGR 164
             ++ +GFAFV     E A  A A +DG   + R++ V  +  ++     +   G+S  +
Sbjct:  74 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKK 133

Query: 165 RGQS 168
           + ++
Sbjct: 134 KKEA 137

gb|AAX70103.1| RNA-binding protein, putative [Trypanosoma brucei]
(593 aa)

Score: 56 bits (134), Expect: 4.15804e-07
Length: 100, Idn/Pos/Gap = 34/54/0 (34%/54%/0%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           P   S +E Q+   L V NIP    + +L++LF PYG+++   +  +       G AFVR
Sbjct: 118 PAADSRAESQSRTNLFVSNIPHLLGKNELVDLFSPYGEILSAAVMRNIHTGDSLGTAFVR 177

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQ 156
             T EQA+AA+ AL G  +  R + V+ A+ +  + PV +
Sbjct: 178 FATTEQAQAAMEALTGYVLEGRSMVVQWAKRQHDDTPVGE 217

emb|CAH65117.1| hypothetical protein [Gallus gallus]
(621 aa)

Score: 56 bits (134), Expect: 4.44506e-07
Length: 76, Idn/Pos/Gap = 29/44/0 (38%/57%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           L  S  L VRN+PF + +EDL ++F  YG + +I  P DR  ++ +GFAF+     E A 
Sbjct:  74 LSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAV 133

Query: 125 AAIAALDGSTMRERII 140
            A A +DG   + R++
Sbjct: 134 KAYAEMDGQVFQGRMM 149

ref|XP_543410.1| PREDICTED: similar to KIAA0682 protein [Canis familiaris]
(2092 aa)

Score: 56 bits (134), Expect: 4.99584e-07
Length: 98, Idn/Pos/Gap = 32/52/0 (32%/53%/0%)

Query:  45 QGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           + +AKP   R       E +L +S  L +RN+P+ + +EDL  LF  +G + ++  P D 
Sbjct: 583 KNSAKPWQGRTLGENEEEEDLADSGRLFIRNLPYTSTEEDLQRLFSKFGPLSELHYPIDS 642

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
             ++ +GFAFV     E A  A A +DG   + R++ V
Sbjct: 643 LTKKPKGFAFVTFMFPEHAVRAYAEVDGQVFQGRMLHV 680

gb|AAP82506.1| nil per os [Danio rerio]
ref|NP_944597.1| RNA binding motif protein 19 [Danio rerio]
(926 aa)

Score: 56 bits (134), Expect: 5.29632e-07
Length: 79, Idn/Pos/Gap = 27/47/0 (34%/59%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+P+   +EDL E+F  +G + ++  P D   ++ +GFAFV     E A +A+A L
Sbjct: 400 LFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 459

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG T + R++ V  +  ++
Sbjct: 460 DGQTFQGRVLHVMASRLKK 478

ref|ZP_00111030.1| COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
(100 aa)

Score: 55 bits (133), Expect: 5.43057e-07
Length: 78, Idn/Pos/Gap = 28/47/0 (35%/60%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +  ++EDL  +F  YG V ++ +P DR+  R+RGF FV +++  Q  AAI 
Sbjct:   1 MSIYVGNLSYEVKEEDLRHVFAEYGTVKNVQLPIDRETGRMRGFGFVEMESDAQETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALD +    R + V +A+
Sbjct:  61 ALDNAEWMGRSLKVNKAK  78

emb|CAA43429.1| ribonucleoprotein [Nicotiana tabacum]
pir||S18883 ribonucleoprotein precursor - common tobacco (fragment)
(292 aa)

Score: 55 bits (133), Expect: 5.80543e-07
Length: 80, Idn/Pos/Gap = 32/44/0 (40%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF      L E+F   G V ++ I +DR   R RGFAFV + ++E+A+ AI   
Sbjct: 105 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 164

Query: 131 DGSTMRERIIAVKRAEYERG 150
           DGS +  R + V   E  RG
Sbjct: 165 DGSQVGGRTVKVNFPEVPRG 184

ref|NP_083038.1| RNA binding motif protein 19 [Mus musculus]
gb|AAH34010.1| RNA binding motif protein 19 [Mus musculus]
gb|AAH25619.1| RNA binding motif protein 19 [Mus musculus]
(952 aa)

Score: 55 bits (133), Expect: 5.90312e-07
Length: 124, Idn/Pos/Gap = 36/64/5 (29%/51%/4%)

Query:  50 PKSSRPFPNRP-----SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           PKS+ P+  R       E +L +S  L VRN+ + + +EDL +LF  YG + ++  P D 
Sbjct: 376 PKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 435

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGR 164
             ++ +GFAFV     E A  A A +DG   + R++ V  +  ++     +   G+S  +
Sbjct: 436 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEASQEANAPGSSYKK 495

Query: 165 RGQS 168
           + ++
Sbjct: 496 KKEA 499

gb|AAH90711.1| Rbm19 protein [Danio rerio]
(802 aa)

Score: 55 bits (133), Expect: 6.00246e-07
Length: 79, Idn/Pos/Gap = 27/47/0 (34%/59%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+P+   +EDL E+F  +G + ++  P D   ++ +GFAFV     E A +A+A L
Sbjct: 401 LFIRNMPYTCTEEDLKEVFSKHGPLSEVLFPIDSLTKKPKGFAFVTYMIPENAVSALAQL 460

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG T + R++ V  +  ++
Sbjct: 461 DGHTFQGRVLHVMASRLKK 479

gb|AAS90636.2| unknown protein [Oryza sativa (japonica cultivar-group)]
(106 aa)

Score: 55 bits (133), Expect: 6.10346e-07
Length: 76, Idn/Pos/Gap = 26/49/3 (34%/64%/3%)

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           +++DL  +FR +G V ++ +  DR+   ++G+A +  +T E+A+AAI ALDG+ +  +II
Sbjct:  25 QEDDLHNIFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQII  84

Query: 141 AVKRAEYERGEGPVSQ 156
           +V   ++    GPV +
Sbjct:  85 SV---DWAFSNGPVKR  97

emb|CAA67134.1| PR264/SC35 [Mus musculus]
(121 aa)

Score: 55 bits (133), Expect: 6.36348e-07
Length: 94, Idn/Pos/Gap = 35/51/2 (37%/54%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

gb|AAT78815.1| putative splicing factor (having alternative splicing products) [Oryza sativa (japonica cultivar-group)]
(205 aa)

Score: 55 bits (133), Expect: 6.80274e-07
Length: 83, Idn/Pos/Gap = 37/54/0 (44%/65%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           +++S  L+V N+ F T  +DLL LF   G+V+DI IP DR+    RGFAFVR +  ++A+
Sbjct:  12 VRDSYSLLVLNVSFRTTADDLLALFDRCGEVLDIRIPRDRRTGDSRGFAFVRYKYEDEAQ  71

Query: 125 AAIAALDGSTMRERIIAVKRAEY 147
            A+  LDG T+  R I V+ A+Y
Sbjct:  72 KAVDKLDGRTVDGRDIMVQFAKY  94

ref|ZP_00161728.2| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
(99 aa)

Score: 55 bits (133), Expect: 7.03361e-07
Length: 87, Idn/Pos/Gap = 30/50/0 (34%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   Q+DL ++F  YG V  + +P DR+  R+RGF FV +++    +AAI 
Sbjct:   1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGPVS 155
           ALDG+    R++ V +A     +G  S
Sbjct:  61 ALDGAEWMGRVLKVNKARPREEKGARS  87

dbj|BAB31653.2| unnamed protein product [Mus musculus]
(242 aa)

Score: 55 bits (132), Expect: 7.97137e-07
Length: 110, Idn/Pos/Gap = 33/62/2 (30%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL  +F  YG V+++ IP  +   ++RGFAFV+ + L +A  A+   
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKGA 174

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +   ++ R +AV  A   + +   +QHA A   ++   R+P+ S  ++ R
Sbjct: 175 NMKEIKGRTVAVDWA-VAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCR 223

dbj|BAB74476.1| RNA binding protein [Nostoc sp. PCC 7120]
ref|NP_486817.1| RNA binding protein [Nostoc sp. PCC 7120]
pir||AB2153 RNA binding protein [imported] - Nostoc sp. (strain PCC 7120)
dbj|BAA77711.1| RNA binding protein [Anabaena variabilis]
(99 aa)

Score: 55 bits (132), Expect: 8.59302e-07
Length: 87, Idn/Pos/Gap = 30/50/0 (34%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   Q+DL ++F  YG V  + +P DR+  R+RGF FV +++    +AAI 
Sbjct:   1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGPVS 155
           ALDG+    R++ V +A     +G  S
Sbjct:  61 ALDGAEWMGRVLKVNKARPREEKGARS  87

dbj|BAB28620.1| unnamed protein product [Mus musculus]
(233 aa)

Score: 55 bits (132), Expect: 8.88465e-07
Length: 110, Idn/Pos/Gap = 33/62/2 (30%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL  +F  YG V+++ IP  +   ++RGFAFV+ + L +A  A+   
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKGA 174

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +   ++ R +AV  A   + +   +QHA A   ++   R+P+ S  ++ R
Sbjct: 175 NMKEIKGRTVAVDWA-VAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCR 223

ref|NP_648337.1| CG3335-PA [Drosophila melanogaster]
gb|AAF50237.1| CG3335-PA [Drosophila melanogaster]
(918 aa)

Score: 55 bits (131), Expect: 9.65777e-07
Length: 111, Idn/Pos/Gap = 35/57/2 (31%/51%/1%)

Query:  30 KDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELF  89
           K S SG  L     + G AK K  +   ++  E ++  S  +  RN+ + T +EDL +LF
Sbjct: 327 KASKSGQPLAPAAVDAGNAKWKHQQDSLSK--EDDISESGRIFFRNLAYTTTEEDLRKLF 384

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
             +G V+++ +P D+  R+I+GF  V     E A  A   LDG+    R++
Sbjct: 385 EQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLL 435

gb|AAM29657.1| SD14970p [Drosophila melanogaster]
(918 aa)

Score: 55 bits (131), Expect: 9.73869e-07
Length: 111, Idn/Pos/Gap = 35/57/2 (31%/51%/1%)

Query:  30 KDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELF  89
           K S SG  L     + G AK K  +   ++  E ++  S  +  RN+ + T +EDL +LF
Sbjct: 327 KASKSGQPLAPAAVDAGNAKWKHQQDSLSK--EDDISESGRIFFRNLAYTTTEEDLRKLF 384

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
             +G V+++ +P D+  R+I+GF  V     E A  A   LDG+    R++
Sbjct: 385 EQFGPVVEVNLPLDKLTRKIKGFGTVTYMMPEHALKAFNTLDGTDFHGRLL 435

ref|XP_222200.3| PREDICTED: similar to RBM19 protein [Rattus norvegicus]
(1170 aa)

Score: 55 bits (131), Expect: 9.98553e-07
Length: 124, Idn/Pos/Gap = 33/62/0 (26%/50%/0%)

Query:  45 QGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           + ++ P   R       E +L +S  L VRN+ + + +EDL +LF  YG + ++  P D 
Sbjct: 522 KSSSAPWQGRTLGEHEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 581

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGR 164
             ++ +GFAFV     E A  A A +DG   + R++ V  +  ++     +   G+S  +
Sbjct: 582 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEANQEANAPGSSYKK 641

Query: 165 RGQS 168
           + ++
Sbjct: 642 KKEA 645

pir||S23780 nucleic acid-binding protein - maize
gb|AAA33486.1| nucleic acid-binding protein
(303 aa)

Score: 55 bits (131), Expect: 9.98553e-07
Length: 100, Idn/Pos/Gap = 38/56/5 (38%/56%/5%)

Query:  48 AKPKSSR-PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           A P+ SR   P R S   L+  VG    N+P+      L+ELF  +G V+D  + +DR+ 
Sbjct: 201 AAPRGSRVDRPPRQSGPSLRIYVG----NLPWQVDDSRLVELFSEHGKVVDARVVYDRET 256

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            R RGF FV + + ++ + AIAALDG ++  R + V  AE
Sbjct: 257 GRSRGFGFVTMASQDELDDAIAALDGQSLDGRALRVNVAE 296

emb|CAA37879.1| unnamed protein product [Nicotiana tabacum]
sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplast precursor
pir||S12111 ribonucleoprotein, 33K, precursor - common tobacco
(324 aa)

Score: 55 bits (131), Expect: 1.04109e-06
Length: 80, Idn/Pos/Gap = 32/44/0 (40%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF      L E+F   G V ++ I +DR   R RGFAFV + ++E+A+ AI   
Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 175

Query: 131 DGSTMRERIIAVKRAEYERG 150
           DGS +  R + V   E  RG
Sbjct: 176 DGSQVGGRTVKVNFPEVPRG 195

ref|XP_508706.1| PREDICTED: similar to FLJ10251 protein [Pan troglodytes]
(1002 aa)

Score: 55 bits (131), Expect: 1.14117e-06
Length: 95, Idn/Pos/Gap = 32/51/0 (33%/53%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct: 824 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDA 883

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHA 158
           + A AA+DG+ +  R + V+ A Y R + P S+  
Sbjct: 884 QDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQG 918

emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplast precursor
(315 aa)

Score: 55 bits (131), Expect: 1.14117e-06
Length: 90, Idn/Pos/Gap = 33/48/1 (36%/53%/1%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           P RP  +  + S  + V NIP+G     L +LF  +G V+   + +DR+  R RGF FV 
Sbjct: 219 PERPPRT-FEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVT 277

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           + +  +   AIA LDG ++  R I V  AE
Sbjct: 278 MASEAEMSDAIANLDGQSLDGRTIRVNVAE 307


Score: 44 bits (103), Expect: 0.00196455
Length: 83, Idn/Pos/Gap = 28/43/1 (33%/51%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+    E L  LF   G V    + ++R   + RGF FV + T+E+AE A+   
Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMY 197

Query: 131 DGSTMRERIIAVKRAEYERGEGP 153
           +   +  R++ V +A   RGE P
Sbjct: 198 NRYDVNGRLLTVNKAA-RRGERP 219

ref|NP_001009720.1| hypothetical protein LOC494445 [Rattus norvegicus]
ref|NP_035488.1| splicing factor, arginine/serine-rich 2 [Mus musculus]
gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sapiens]
emb|CAA53383.1| PR264/SC35 [Homo sapiens]
emb|CAA44307.1| PR 264 [Homo sapiens]
gb|AAX41688.1| splicing factor arginine/serine-rich 2 [synthetic construct]
ref|XP_585074.1| PREDICTED: similar to Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) [Bos taurus]
gb|AAH70086.1| Splicing factor, arginine/serine-rich 2 [Homo sapiens]
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein)
gb|AAH01303.1| SFRS2 protein [Homo sapiens]
gb|AAH00339.1| SFRS2 protein [Homo sapiens]
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa)
gb|AAC71000.1| splicing factor SC35 [Mus musculus]
pir||A42701 splicing factor SFRS2 - human
dbj|BAC40111.1| unnamed protein product [Mus musculus]
dbj|BAC39610.1| unnamed protein product [Mus musculus]
gb|AAH05493.1| Sfrs2 protein [Mus musculus]
ref|NP_003007.2| splicing factor, arginine/serine-rich 2 [Homo sapiens]
gb|AAH58508.1| Similar to splicing factor, arginine/serine-rich 2 [Rattus norvegicus]
prf||1805195B RNA-binding protein PR264
(221 aa)

Score: 55 bits (131), Expect: 1.17009e-06
Length: 94, Idn/Pos/Gap = 35/51/2 (37%/54%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

gb|AAH64167.1| Hypothetical protein MGC75633 [Xenopus tropicalis]
ref|NP_989328.1| hypothetical protein MGC75633 [Xenopus tropicalis]
(220 aa)

Score: 55 bits (131), Expect: 1.19975e-06
Length: 107, Idn/Pos/Gap = 41/56/7 (38%/52%/6%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRR 170
           E A+ A+DG+ +  R + V+ A Y  G  P S H     GRRG   R
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH-----GRRGPPPR 108

ref|XP_231550.2| PREDICTED: similar to Rbm28 protein [Rattus norvegicus]
(753 aa)

Score: 54 bits (130), Expect: 1.27191e-06
Length: 110, Idn/Pos/Gap = 33/62/2 (30%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL  +F  YG V+++ IP  +   ++RGFAF++ + L +A  A+   
Sbjct: 116 LIIRNLSFKCSEDDLKSVFTHYGTVLEVNIP-RKPDGKMRGFAFIQFKNLLEAGKALKGA 174

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +   ++ R +AV  A   + +   +QH   S G++   R+P+ S  +S R
Sbjct: 175 NMKEIKGRTVAVDWA-VAKDKYKDAQHTSVSGGKKSSERKPKESSKKSCR 223

ref|XP_611872.1| PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein..., partial [Bos taurus]
(219 aa)

Score: 54 bits (130), Expect: 1.29331e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:  32 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  91

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  92 HNLDRKCICGRQIEIQFAQGDR 113

ref|XP_535359.1| PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein... [Canis familiaris]
(146 aa)

Score: 54 bits (130), Expect: 1.3261e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAD18922.1| RNA-binding protein precursor [Persea americana]
(315 aa)

Score: 54 bits (130), Expect: 1.45357e-06
Length: 107, Idn/Pos/Gap = 40/55/3 (37%/51%/2%)

Query:  40 GETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIF  99
           G T     A P+ SR    RP   + + +  + V NIP+      L +LF  YG V +  
Sbjct: 204 GRTLTVNKAAPRGSRA--ERPPR-DFEPAFRVYVGNIPWQVDNLRLEQLFSEYGKVEEAR 260

Query: 100 IPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           I +DR+  R RGF FV + +  + E AIAALDGS +  R I V  A+
Sbjct: 261 IVFDRETGRSRGFGFVTMSSQIEMEDAIAALDGSDLDGRAIKVSMAQ 307


Score: 44 bits (103), Expect: 0.00166261
Length: 112, Idn/Pos/Gap = 36/52/8 (32%/46%/7%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYG  93
           SGA    E+ E G A  + S   P  P E      V + V N+PF     DL +LF   G
Sbjct: 109 SGAEDEEESGEVGFADEEDSYSAP--PEE------VKIFVGNLPFDLESADLADLFNKAG 160

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            V    + ++R+  + RGF FV + T+E+   AI   D   +  R + V +A
Sbjct: 161 VVESAEVIYNRETDQSRGFGFVSMSTVEEVVKAIEMFDRYDINGRTLTVNKA 212

ref|XP_415318.1| PREDICTED: similar to RNA binding motif protein 19 [Gallus gallus]
(917 aa)

Score: 54 bits (130), Expect: 1.51549e-06
Length: 75, Idn/Pos/Gap = 29/43/0 (38%/57%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           L  S  L VRN+PF + +EDL ++F  YG + +I  P DR  ++ +GFAF+     E A 
Sbjct: 383 LSESGRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAV 442

Query: 125 AAIAALDGSTMRERI 139
            A A +DG   + +I
Sbjct: 443 KAYAEMDGQVFQLKI 457

gb|EAL48972.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
gb|EAL43594.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
(574 aa)

Score: 54 bits (130), Expect: 1.5539e-06
Length: 111, Idn/Pos/Gap = 29/60/4 (26%/54%/3%)

Query:  44 EQGAAKPKSSRPFPN---RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFI 100
           +   ++PK    F N   +P+ S L+  + + + NIPF  ++ D+LE F+ +  V  + I
Sbjct: 118 QHANSQPKQISFFTNVLKQPTSSLLKGIITVRIFNIPFTWKEHDVLEYFKEFHPVKALII 177

Query: 101 PWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGE 151
            +D++ +  +G+AF+   TL +A   I   +G   R ++ ++K ++  + E
Sbjct: 178 -YDKESKISKGYAFIYFPTLNEANKVIQKFNGIKYRGKVFSLKLSQPNKEE 227

dbj|BAC35411.1| unnamed protein product [Mus musculus]
(521 aa)

Score: 54 bits (129), Expect: 1.58005e-06
Length: 98, Idn/Pos/Gap = 34/53/5 (34%/54%/5%)

Query:  50 PKSSRPFPNRP-----SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           PKS+ P+  R       E +L +S  L VRN+ + + +EDL +LF  YG + ++  P D 
Sbjct: 376 PKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS 435

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
             ++ +GFAFV     E A  A A +DG   + R++ V
Sbjct: 436 LTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 473

emb|CAA06469.1| cp31AHv protein [Hordeum vulgare subsp. vulgare]
pir||T05725 cp31AHv protein - barley
(294 aa)

Score: 54 bits (129), Expect: 1.66117e-06
Length: 100, Idn/Pos/Gap = 38/55/5 (38%/55%/5%)

Query:  48 AKPKSSR-PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           A P+ +R   P R S S  +  VG    N+P+      L+ELF  +G V+D  + +DR  
Sbjct: 192 AAPRGARVERPPRDSGSSFRIYVG----NLPWQVDDSRLVELFSEHGKVVDAKVVYDRDT 247

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            R RGF FV + + E+ + AIAALDG ++  R + V  AE
Sbjct: 248 GRSRGFGFVTMASQEELDDAIAALDGQSLEGRALRVNVAE 287

emb|CAA41253.1| 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris]
pir||S77714 RNA-binding protein precursor, 33K - wood tobacco
(319 aa)

Score: 54 bits (129), Expect: 1.67509e-06
Length: 80, Idn/Pos/Gap = 32/44/0 (40%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF      L E+F   G V ++ I +DR   R RGFAFV + ++E+A+ AI   
Sbjct: 111 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLF 170

Query: 131 DGSTMRERIIAVKRAEYERG 150
           DGS +  R + V   E  RG
Sbjct: 171 DGSQVGGRTVKVNFPEVPRG 190

emb|CAG08546.1| unnamed protein product [Tetraodon nigroviridis]
(944 aa)

Score: 54 bits (129), Expect: 1.80572e-06
Length: 108, Idn/Pos/Gap = 32/57/6 (29%/52%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRN+P+   +E+L ELF  +G + ++  P D   ++ +GFAF+     E A AA+A L
Sbjct: 417 LFVRNLPYTCTEEELKELFTKHGPLSEMHFPIDSLTKKSKGFAFITYMIPENAVAALAQL 476

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRS 178
           DG   + R++ +  +  ++      + A +  G  G S   R+ D ++
Sbjct: 477 DGHIFQGRMLHLLPSTIKK------EKADSDAGAPGSSSYKRQKDAKT 518

dbj|BAC36346.1| unnamed protein product [Mus musculus]
(254 aa)

Score: 54 bits (129), Expect: 1.867e-06
Length: 94, Idn/Pos/Gap = 35/51/2 (37%/54%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

gb|EAA14228.2| ENSANGP00000010223 [Anopheles gambiae str. PEST]
ref|XP_318826.2| ENSANGP00000010223 [Anopheles gambiae str. PEST]
(172 aa)

Score: 53 bits (128), Expect: 2.11592e-06
Length: 85, Idn/Pos/Gap = 35/47/0 (41%/55%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + L V N+ + T  +DL  +F   G+V DI+IP DR  R  RGFAFVR      AE A+ 
Sbjct:  22 ISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYDKRDAEDALD  81

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
           A+DG  +  R + V+ A Y R   P
Sbjct:  82 AMDGRMLDGRELRVQMARYGRPTSP 106

ref|NP_925476.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
dbj|BAC90471.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
(123 aa)

Score: 53 bits (128), Expect: 2.16955e-06
Length: 76, Idn/Pos/Gap = 33/46/1 (43%/60%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+PF   ++D+ E F  YG V  + IP DR+  R RGFAFV +   E+A+  I +L
Sbjct:   3 VFVGNLPFSVTEQDITEAFSEYGTVKSVKIPTDRETGRPRGFAFVEMADEEEAK-VIESL  61

Query: 131 DGSTMRERIIAVKRAE 146
           DG+T   R I V +AE
Sbjct:  62 DGATWDNRQIRVNKAE  77

gb|EAL23802.1| similar to Splicing factor, arginine/serine-rich, 46kD [Homo sapiens]
(549 aa)

Score: 53 bits (128), Expect: 2.50019e-06
Length: 119, Idn/Pos/Gap = 41/59/1 (34%/49%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct: 265 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDA 324

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRR 182
           + A AA+DG+ + ER + V+ A Y R + P S       GR    R  RRS     R R
Sbjct: 325 QDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQE-EPRGRSWGGRYGRRSGSPRGRHR 382

ref|ZP_00176010.1| COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
(81 aa)

Score: 53 bits (128), Expect: 2.58504e-06
Length: 77, Idn/Pos/Gap = 29/45/0 (37%/58%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +  ++EDL E+F  YG V  + +P D++  R RGFAFV L+T  +  +AI 
Sbjct:   1 MSIYVGNLSYEVKEEDLNEVFAEYGTVKRVHVPTDKETGRPRGFAFVELETKAEESSAIE  60

Query: 129 ALDGSTMRERIIAVKRA 145
            LDG+    R + V  A
Sbjct:  61 TLDGAEWMGRTMKVDEA  77

ref|NP_683045.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
dbj|BAC09807.1| RNA-binding protein [Thermosynechococcus elongatus BP-1]
(94 aa)

Score: 53 bits (127), Expect: 2.74052e-06
Length: 84, Idn/Pos/Gap = 31/46/0 (36%/54%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   QEDL  +F  YG V  +++P DR+  R RGF FV + +  + EAAIA
Sbjct:   1 MSIYVGNLSYTATQEDLEAVFAEYGSVKQVYLPVDRETGRKRGFGFVEMSSDAEEEAAIA  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEG 152
            LDG+    R + V +A      G
Sbjct:  61 DLDGAEWMGRQLKVNKARPREAMG  84

gb|AAG00575.1| splicing factor arginine/serine rich 2 [Oryzias latipes]
(211 aa)

Score: 53 bits (127), Expect: 3.02912e-06
Length: 79, Idn/Pos/Gap = 33/45/0 (41%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      AE A+ A+
Sbjct:   2 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYSKESRGFAFVRFFDKRDAEDAMDAM  61

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG+ +  R + V+ A Y R
Sbjct:  62 DGALLDGRELRVQMARYGR  80

emb|CAE71949.1| Hypothetical protein CBG19017 [Caenorhabditis briggsae]
(360 aa)

Score: 53 bits (127), Expect: 3.0545e-06
Length: 120, Idn/Pos/Gap = 38/61/4 (31%/50%/3%)

Query:  32 SPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELF  89
           +P  +  +   ++  + +P  + P   +P   E  +     + V NIPF  R++DL  +F
Sbjct:  14 APDLSQFMNNMSQANSKEPVFTMPISVKPKTREPASFTDNRIYVSNIPFSFREQDLAAMF  73

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
             YG V+ + I  +   R  +GF FV L ++E  E A AAL  S ++ RII V+RA   R
Sbjct:  74 FAYGRVLSVEIVTND--RGSKGFGFVTLDSIESCEKARAALHESHVQGRIIEVRRATPTR 131

dbj|BAD46651.1| putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
dbj|BAD46644.1| putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
(322 aa)

Score: 53 bits (127), Expect: 3.40445e-06
Length: 79, Idn/Pos/Gap = 31/47/0 (39%/59%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  + V N+P+      L++LF  +G V+D  + +DR+  R RGF FV + T E+ + AI
Sbjct: 236 SFRIYVGNLPWQVDDSRLVQLFSEHGKVVDARVVYDRETGRSRGFGFVTMATQEELDDAI 295

Query: 128 AALDGSTMRERIIAVKRAE 146
           AALDG ++  R + V  AE
Sbjct: 296 AALDGQSLDGRALRVNVAE 314

gb|AAH46045.1| Zgc:56283 [Danio rerio]
ref|NP_998547.1| zgc:56283 [Danio rerio]
(225 aa)

Score: 53 bits (127), Expect: 3.40445e-06
Length: 86, Idn/Pos/Gap = 33/48/0 (38%/55%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYER 149
           E A+ A+DG+ +  R + V+ A Y R
Sbjct:  69 EDAMDAMDGALLDGRELRVQMARYGR  94

dbj|BAA35093.1| neural specific sr protein NSSR 2 [Mus musculus]
(183 aa)

Score: 53 bits (126), Expect: 3.60921e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAI14804.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
(182 aa)

Score: 53 bits (126), Expect: 3.89068e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

ref|YP_172807.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
dbj|BAD80287.1| RRM type RNA-binding protein [Synechococcus elongatus PCC 6301]
ref|ZP_00165016.1| COG0724: RNA-binding proteins (RRM domain) [Synechococcus elongatus PCC 7942]
(95 aa)

Score: 53 bits (126), Expect: 4.09041e-06
Length: 92, Idn/Pos/Gap = 31/52/0 (33%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ F   +ED+ E+F  YG V  + +P DR+  R+RGFAF+ ++     +AAI+ L
Sbjct:   3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISEL  62

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASD 162
           DG+    R + V +A  +    P ++  G +D
Sbjct:  63 DGAEWFGRQLRVSKARPKDDRRPAARSGGYAD  94

ref|ZP_00326756.1| COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
(89 aa)

Score: 53 bits (126), Expect: 4.37277e-06
Length: 86, Idn/Pos/Gap = 34/50/2 (39%/58%/2%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +    EDL   F  YG+V  + +P DR+  R RGFAFV +++ ++  AAI 
Sbjct:   1 MSVYVGNLSYDATDEDLKTAFAKYGNVKRVQVPNDRETGRPRGFAFVEMESEDEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRA--EYERGEG 152
            LDGS +  RI+ V +A    ERG G
Sbjct:  61 GLDGSELMGRILKVNKARPREERGSG  86

ref|NP_034308.1| FUS interacting protein (serine-arginine rich) 1 [Mus musculus]
ref|NP_006616.1| FUS interacting protein (serine-arginine rich) 1 isoform 1 [Homo sapiens]
emb|CAI14803.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
dbj|BAA91601.1| unnamed protein product [Homo sapiens]
gb|AAH01107.1| FUS interacting protein (serine-arginine rich) 1, isoform 1 [Homo sapiens]
gb|AAL16665.1| TLS-associated protein TASR-1 [Homo sapiens]
gb|AAL06098.1| TLS-associated SR protein 1 [Homo sapiens]
gb|AAC70918.1| TLS-associated protein TASR [Homo sapiens]
gb|AAC70916.1| TLS-associated protein with SR repeats [Mus musculus]
gb|AAN65381.1| splicing factor SRp38-2 [Homo sapiens]
(183 aa)

Score: 53 bits (126), Expect: 4.4094e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

gb|AAC78303.1| RNA-binding protein [Schistosoma japonicum]
(151 aa)

Score: 52 bits (125), Expect: 4.63577e-06
Length: 89, Idn/Pos/Gap = 35/50/0 (39%/56%/0%)

Query:  61 SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTL 120
           S   +   V L V N+ + T  +DL  +F  +G+V DI+IP D      RGFAFVR  T 
Sbjct:   7 SPPRIDGMVSLKVDNLAYRTTIDDLRRVFSRFGEVGDIYIPRDPYTFESRGFAFVRYCTD  66

Query: 121 EQAEAAIAALDGSTMRERIIAVKRAEYER 149
            +A+ AI  +DG  +  R + V+RA+Y R
Sbjct:  67 READCAIRGMDGHKVDGREVRVQRAKYGR  95

emb|CAE06529.1| RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus sp. WH 8102]
ref|NP_896112.1| RNA-binding region RNP-1 (RNA recognition motif) [Synechococcus sp. WH 8102]
(214 aa)

Score: 52 bits (125), Expect: 4.71378e-06
Length: 85, Idn/Pos/Gap = 32/49/1 (37%/57%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+PF   QED++ELF  +G+V +  +P +R   R RGFAFV +      +AAI 
Sbjct:   1 MSIFVGNLPFRAEQEDVIELFAQFGEVANCALPLERDTGRKRGFAFVEMADEAVEDAAIE  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
            L G+ +  R + + +AE  RG  P
Sbjct:  61 GLQGAELMGRPLRINKAE-PRGSAP  84

gb|AAH76169.1| Unknown (protein for IMAGE:7074336) [Danio rerio]
(300 aa)

Score: 52 bits (125), Expect: 4.99729e-06
Length: 89, Idn/Pos/Gap = 34/45/6 (38%/50%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RP E        L V N+P     ED  +LF  YGD  ++FI       R RGF F+RL+
Sbjct:  66 RPGEKTFTQRCRLFVGNLPSDMADEDFKKLFFKYGDAKEVFI------NRDRGFGFIRLE 119

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           T   AE A A LDG+ +  R I ++ A +
Sbjct: 120 TRTLAEIAKAELDGTVLGNRPIRIRFATH 148

gb|AAH45480.1| Splicing factor, arginine/serine-rich 2 (SC-35) [Danio rerio]
ref|NP_955945.1| splicing factor, arginine/serine-rich 2 (SC-35) [Danio rerio]
(218 aa)

Score: 52 bits (125), Expect: 5.21018e-06
Length: 79, Idn/Pos/Gap = 33/45/0 (41%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      AE A+ A+
Sbjct:  16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM  75

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG+ +  R + V+ A Y R
Sbjct:  76 DGAILDGRELRVQMARYGR  94

ref|NP_682233.1| RNA binding protein [Thermosynechococcus elongatus BP-1]
dbj|BAC08995.1| RNA binding protein [Thermosynechococcus elongatus BP-1]
(90 aa)

Score: 52 bits (125), Expect: 5.25384e-06
Length: 82, Idn/Pos/Gap = 30/46/0 (36%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L + N+ +   + DL E+F  YG +  I +P DR+  + RGFAFV L    Q   AI  L
Sbjct:   3 LYIGNLSYEATENDLREVFEKYGAIRRIVLPVDRETGKRRGFAFVELADETQEAVAIDDL  62

Query: 131 DGSTMRERIIAVKRAEYERGEG 152
           DG+T   R++ V +A+ ++  G
Sbjct:  63 DGATWLGRVLKVNKAKPKQPGG  84

ref|XP_513202.1| PREDICTED: similar to TLS-associated protein TASR-2 [Pan troglodytes]
(247 aa)

Score: 52 bits (125), Expect: 5.6165e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
(221 aa)

Score: 52 bits (124), Expect: 6.25998e-06
Length: 94, Idn/Pos/Gap = 35/51/2 (37%/54%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

gb|AAH65971.1| Zgc:55876 protein [Danio rerio]
(220 aa)

Score: 52 bits (124), Expect: 6.36532e-06
Length: 79, Idn/Pos/Gap = 33/45/0 (41%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ + T  E L  +F  YG V D++IP DR  +  RGFAFVR      AE A+ A+
Sbjct:  16 LKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM  75

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG+ +  R + V+ A Y R
Sbjct:  76 DGAILDGRELRVQMARYGR  94

gb|AAF06670.1| RbpD [Nostoc sp. PCC 7120]
dbj|BAA08402.1| RNA-binding protein [Anabaena variabilis]
dbj|BAB76382.1| RNA-binding protein [Nostoc sp. PCC 7120]
ref|NP_488723.1| RNA-binding protein [Nostoc sp. PCC 7120]
pir||AC2391 RNA-binding protein [imported] - Nostoc sp. (strain PCC 7120)
(110 aa)

Score: 52 bits (124), Expect: 6.97719e-06
Length: 78, Idn/Pos/Gap = 30/45/0 (38%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + + N+ +   +EDL   F  YG V  + +P DR+  R RGFAFV ++T  Q  AAI 
Sbjct:   1 MSIYIGNLSYQVTEEDLKLAFAEYGKVSRVQLPTDRETGRPRGFAFVEMETEAQETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

ref|XP_599924.1| PREDICTED: similar to TLS-associated protein TASR-2, partial [Bos taurus]
(220 aa)

Score: 52 bits (124), Expect: 6.97719e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:  32 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  91

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  92 HNLDRKCICGRQIEIQFAQGDR 113

ref|ZP_00327988.1| COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
(97 aa)

Score: 52 bits (124), Expect: 7.77657e-06
Length: 96, Idn/Pos/Gap = 33/51/0 (34%/53%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   QEDL E+F  YG V  + +P DR+  R RGF FV + + E+ + AI 
Sbjct:   1 MSIYVGNLSYDVTQEDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSEEEEQKAID  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGR 164
           ALD +    R I V +A+      P ++    + GR
Sbjct:  61 ALDSAEWMGRDIKVNKAKPREERKPSNRRDPGAGGR  96

gb|AAA81023.1| CEBP-1 [Dianthus caryophyllus]
pir||S71556 DNA-binding protein CEBP-1 - clove pink
(292 aa)

Score: 51 bits (123), Expect: 7.84172e-06
Length: 109, Idn/Pos/Gap = 34/54/1 (31%/49%/0%)

Query:  45 QGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR 104
           + A++P+ S  F +    SE    V L V N+PF    E L  +F   G V    + ++R
Sbjct:  88 EDASEPQPSSGFGSEDGFSEPSEDVKLYVGNLPFDVDSEKLANMFDAAGVVEIAEVIYNR 147

Query: 105 QLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGP 153
           +  R RGF FV + T+E+A+ A+       +  R++ V +A   RG  P
Sbjct: 148 ETDRSRGFGFVTMSTVEEADKAVEMFHSYELNGRLLTVNKAA-PRGSRP 195


Score: 42 bits (98), Expect: 0.00621337
Length: 109, Idn/Pos/Gap = 33/52/9 (30%/47%/8%)

Query:  39 IGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + +   +G+   K+ R F    SES         V N+P+    + L +L   +G V+  
Sbjct: 185 VNKAAPRGSRPEKAPREFCPLLSES--------YVGNLPWDVDNDRLEQLSSEHGKVLSA 236

Query:  99 FIPWDRQLRRIRGFAFVRLQT-LEQAEAAIAALDGSTMRERIIAVKRAE 146
            +  DR+  R RGF FV + +  E  +A + ALDG ++  R I V  AE
Sbjct: 237 RVVSDRETERSRGFGFVTMASETEMNDATLGALDGESLEGRPIRVNVAE 285

emb|CAE59999.1| Hypothetical protein CBG03493 [Caenorhabditis briggsae]
(877 aa)

Score: 51 bits (123), Expect: 7.90743e-06
Length: 79, Idn/Pos/Gap = 27/48/0 (34%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+P+ T+++DL  LF+ YG+V ++ +  D++    +GFA V     E A AA +AL
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVIIDKKTGSCKGFAIVEFVFPEAAVAAYSAL 340

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG   + R++ +   + +R
Sbjct: 341 DGYVFKGRMMHILPGDEKR 359

emb|CAI14806.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
(172 aa)

Score: 51 bits (123), Expect: 8.04049e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

ref|NP_702322.1| hypothetical protein PF14_0433 [Plasmodium falciparum 3D7]
gb|AAN37046.1| hypothetical protein [Plasmodium falciparum 3D7]
(596 aa)

Score: 51 bits (123), Expect: 8.10786e-06
Length: 102, Idn/Pos/Gap = 30/56/6 (29%/54%/5%)

Query:  52 SSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRG 111
           S + F NR  +  L+N   L V+NIP  T++ +LLE+F+P+G +  I +  ++ +     
Sbjct:  16 SKKEFENRFDDKALRN---LCVKNIPKETKENELLEIFQPFGLIESIKLKVNKNVGPYAI  72

Query: 112 FAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGP 153
           +A V   T E+A+  +  ++G  +  R +   R +Y+R + P
Sbjct:  73 YAHVLFSTPEEAKRCLKQMNGKILNGRAL---RIDYKRKKNP 111

emb|CAB05631.1| Hypothetical protein T23F6.4 [Caenorhabditis elegans]
ref|NP_502432.1| RNA Binding Domain protein (98.0 kD) (rbd-1) [Caenorhabditis elegans]
pir||T25186 hypothetical protein T23F6.4 - Caenorhabditis elegans
(872 aa)

Score: 51 bits (123), Expect: 8.17579e-06
Length: 79, Idn/Pos/Gap = 27/48/0 (34%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+P+ T+++DL  LF+ YG+V ++ +  D++    +GFA V     E A AA +AL
Sbjct: 281 LFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACKGFAIVEFVFPEAAVAAYSAL 340

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG   + R++ +   + +R
Sbjct: 341 DGYVFKGRMMHILPGDEKR 359

ref|XP_342949.2| PREDICTED: similar to FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein... [Rattus norvegicus]
(164 aa)

Score: 51 bits (123), Expect: 8.17579e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

pir||S50765 RNA-binding protein - common ice plant
gb|AAA33039.1| RNA-binding protein
(289 aa)

Score: 51 bits (123), Expect: 8.31337e-06
Length: 99, Idn/Pos/Gap = 35/51/3 (35%/51%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +  E + S  + V N+P+      L ++F  +G V+   +  DR+  
Sbjct: 187 AAPRGSRP---ERAPREYEPSFRVYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETG 243

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGFAFV + +  +   AI ALDG T+  R I V  AE
Sbjct: 244 RSRGFAFVTMASESEMNEAIGALDGQTLEGRAIRVNVAE 282


Score: 41 bits (97), Expect: 0.0085315
Length: 83, Idn/Pos/Gap = 28/42/1 (33%/50%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF    E L ++F   G V    + ++R+  R RGF FV + T+E+AE A+   
Sbjct: 113 LFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELY 172

Query: 131 DGSTMRERIIAVKRAEYERGEGP 153
               +  R + V +A   RG  P
Sbjct: 173 HKFEVNGRFLTVNKAA-PRGSRP 194

dbj|BAC43345.1| putative Serine/arginine rich protein [Arabidopsis thaliana]
(236 aa)

Score: 51 bits (123), Expect: 8.38302e-06
Length: 114, Idn/Pos/Gap = 36/58/2 (31%/50%/1%)

Query:  59 RPSESELQNS--VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           RPS  + ++S   GL++RN+P   R  DL + F  +G + DI++P +      RGF FV+
Sbjct:  35 RPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVK  94

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRR 170
            +  E A  A+  ++   +  R IA+  AE  R      +    + GRRG  +R
Sbjct:  95 YRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTTQEMRTTNGTSGRRGDYKR 148

dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan troglodytes]
sp|Q5R1W5|SFRS2_PANTR Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa)
(221 aa)

Score: 51 bits (123), Expect: 8.66753e-06
Length: 94, Idn/Pos/Gap = 35/51/2 (37%/54%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

gb|AAH10074.1| FUSIP1 protein [Homo sapiens]
emb|CAI14805.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
(173 aa)

Score: 51 bits (123), Expect: 8.74015e-06
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

gb|AAH40811.1| Rbm28 protein [Mus musculus]
sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 (RNA binding motif protein 28)
(750 aa)

Score: 51 bits (123), Expect: 8.81338e-06
Length: 110, Idn/Pos/Gap = 33/62/2 (30%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL  +F  YG V+++ IP  +   ++RGFAFV+ + L +A  A+   
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIP-KKPDGKMRGFAFVQFKNLLEAGKALKGA 174

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +   ++ R +AV  A   + +   +QHA A   ++   R+P+ S  ++ R
Sbjct: 175 NMKEIKGRTVAVDWA-VAKDKYKDAQHASAPGVKKSSDRKPKESGKKNCR 223

gb|AAA60306.1| splicing factor
(221 aa)

Score: 51 bits (123), Expect: 8.96169e-06
Length: 94, Idn/Pos/Gap = 34/50/2 (36%/53%/2%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  Y  V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYRRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
           E A+ A+DG+ +  R + V+ A Y  G  P S H
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHH 100

pir||S58673 RNA-binding protein RbpC - Anabaena variabilis (fragment)
(109 aa)

Score: 51 bits (123), Expect: 9.42175e-06
Length: 76, Idn/Pos/Gap = 30/44/0 (39%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ +   +EDL   F  YG V  + +P DR+  R RGFAFV ++T  Q  AAI AL
Sbjct:   2 IYIGNLSYQVTEEDLKLAFAEYGKVSRVQLPTDRETGRPRGFAFVEMETEAQETAAIEAL  61

Query: 131 DGSTMRERIIAVKRAE 146
           DG+    R + V +A+
Sbjct:  62 DGAEWMGRDLKVNKAK  77

pir||T06232 Ps16 protein - wheat
dbj|BAA22411.1| Ps16 protein [Triticum aestivum]
(293 aa)

Score: 51 bits (123), Expect: 9.90543e-06
Length: 100, Idn/Pos/Gap = 37/54/5 (37%/54%/5%)

Query:  48 AKPKSSR-PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           A P+ +R   P R S S  +  VG    N+P+      L+ELF  +G V+D  + +DR  
Sbjct: 191 AAPRGARVERPPRDSGSSFRIYVG----NLPWQVDDSRLVELFSEHGKVVDARVVYDRDT 246

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            R RGF FV + +  + + AIAALDG ++  R + V  AE
Sbjct: 247 GRSRGFGFVTMASQPELDDAIAALDGQSLEGRALRVNVAE 286

emb|CAG83044.1| unnamed protein product [Yarrowia lipolytica CLIB99]
ref|XP_500793.1| hypothetical protein [Yarrowia lipolytica]
(828 aa)

Score: 51 bits (122), Expect: 1.02416e-05
Length: 112, Idn/Pos/Gap = 29/60/4 (25%/53%/3%)

Query:  50 PKSSRPFPNRPSES----ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQ 105
           PK++ P    PSE      ++ +  L +RN+ +  ++ED  +LF  YG++ ++ +P + +
Sbjct: 278 PKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEVHLPINTK 337

Query: 106 LRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
             + +GFA V+ +  E A AA  A DG   + R++ +   + ++    + +H
Sbjct: 338 TGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILPGKPKKDYNRLDEH 389

emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)
pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
(276 aa)

Score: 51 bits (122), Expect: 1.03274e-05
Length: 99, Idn/Pos/Gap = 34/50/3 (34%/50%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    Q +  + V NIP+      L ++F  +G V+   + +DR+  
Sbjct: 173 AAPRGSRP---ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESG 229

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV + +  +   AIA LDG T+  R I V  AE
Sbjct: 230 RSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAE 268


Score: 46 bits (108), Expect: 0.000516989
Length: 117, Idn/Pos/Gap = 34/53/1 (29%/45%/0%)

Query:  37 TLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVI  96
           TL+ +  EQG   P             E      L V N+P+    E L +LF+  G V 
Sbjct:  65 TLVLDDQEQGGDFPSFVGEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVE 124

Query:  97 DIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGP 153
              + ++R+  R RGF FV + T+E+A+ A+       +  R++ V +A   RG  P
Sbjct: 125 IAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAA-PRGSRP 180

ref|NP_652612.1| CG5442-PB, isoform B [Drosophila melanogaster]
gb|AAF53192.1| CG5442-PB, isoform B [Drosophila melanogaster]
gb|AAL39729.1| LD32469p [Drosophila melanogaster]
gb|AAF43415.1| SR family splicing factor SC35 [Drosophila melanogaster]
(195 aa)

Score: 51 bits (122), Expect: 1.03274e-05
Length: 79, Idn/Pos/Gap = 35/45/0 (44%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           V L V N+ + T  EDL  +F   G+V DI+IP DR  R  RGFAFVR      AE A+ 
Sbjct:  23 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALE  82

Query: 129 ALDGSTMRERIIAVKRAEY 147
           A+DG  +  R + V+ A Y
Sbjct:  83 AMDGRMLDGRELRVQMARY 101

sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplast (28RNP)
(233 aa)

Score: 51 bits (122), Expect: 1.05892e-05
Length: 113, Idn/Pos/Gap = 36/54/3 (31%/47%/2%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYG  93
           +G  + G       A P+ S   P R    + + S  + V N+P+      L +LF  +G
Sbjct: 117 NGYDMDGRQLTVNKAAPRGS---PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHG 173

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            V+   +  DR+  R RGF FV + +  +   AIAALDG T+  R + V  AE
Sbjct: 174 KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226


Score: 45 bits (105), Expect: 0.00107736
Length: 126, Idn/Pos/Gap = 37/57/6 (29%/45%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNR------PSESELQNSVGLMVRNIPFG  79
           S   ++  + A L GE+  +GA    S     +          SE      L V N+P+ 
Sbjct:   6 SEWEQEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYD  65

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
              E L  +F   G V    + ++R+  R RGF FV + T+E+AE A+  L+G  M  R 
Sbjct:  66 VDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQ 125

Query: 140 IAVKRA 145
           + V +A
Sbjct: 126 LTVNKA 131

gb|EAL23803.1| similar to Splicing factor, arginine/serine-rich, 46kD [Homo sapiens]
(293 aa)

Score: 51 bits (122), Expect: 1.05892e-05
Length: 119, Idn/Pos/Gap = 41/59/1 (34%/49%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct:   9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPLEPHTKAPRGFAFVRFHDRSDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRR 182
           + A AA+DG+ + ER + V+ A Y R + P S       GR    R  RRS     R R
Sbjct:  69 QDAEAAMDGAVLDERELRVRMARYGRRDLPRSSQE-EPRGRSWGGRYGRRSGSPRGRHR 126

emb|CAA57551.1| chloroplast RNA binding protein [Phaseolus vulgaris]
pir||S49463 RNA-binding protein RNP1 precursor - kidney bean
(287 aa)

Score: 51 bits (122), Expect: 1.09486e-05
Length: 101, Idn/Pos/Gap = 32/52/2 (31%/51%/1%)

Query:  52 SSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRG 111
           S++P    P   E ++   L V N+ +    E L + F+ YG V+   + +D +  R RG
Sbjct: 189 SNKPKAKEPLYPETEHK--LFVGNLSWSVTNEILTQAFQEYGTVVGARVLYDGETGRSRG 246

Query: 112 FAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEG 152
           + FV   T E+ EAA+ AL+   +  R + V  AE +R +G
Sbjct: 247 YGFVCFSTKEEMEAALGALNDVELEGRAMRVSLAEGKRAQG 287


Score: 43 bits (100), Expect: 0.00423291
Length: 87, Idn/Pos/Gap = 26/39/0 (29%/44%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L   N+P+      L  L + YG    I + +DR   + RGFAFV +  +E   A I
Sbjct: 112 STKLYFGNLPYSVDSAKLAGLIQDYGSAELIEVLYDRDTGKSRGFAFVTMSCIEDCNAVI 171

Query: 128 AALDGSTMRERIIAVKRAEYERGEGPV 154
             LDG     R + V  +   + + P+
Sbjct: 172 ENLDGKEYLGRTLRVNFSNKPKAKEPL 198

dbj|BAC03903.1| unnamed protein product [Homo sapiens]
(201 aa)

Score: 51 bits (122), Expect: 1.13201e-05
Length: 82, Idn/Pos/Gap = 30/46/0 (36%/56%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRA 145
           E A+ A+DG+ +  R + V+ A
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMA  90

emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
(226 aa)

Score: 51 bits (122), Expect: 1.13201e-05
Length: 113, Idn/Pos/Gap = 36/54/3 (31%/47%/2%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYG  93
           +G  + G       A P+ S   P R    + + S  + V N+P+      L +LF  +G
Sbjct: 110 NGYDMDGRQLTVNKAAPRGS---PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHG 166

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            V+   +  DR+  R RGF FV + +  +   AIAALDG T+  R + V  AE
Sbjct: 167 KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 219


Score: 44 bits (104), Expect: 0.00131622
Length: 122, Idn/Pos/Gap = 36/56/6 (29%/45%/4%)

Query:  30 KDSPSGATLIGETTEQGAAKPKSSRPFPNR------PSESELQNSVGLMVRNIPFGTRQE  83
           ++  + A L GE+  +GA    S     +          SE      L V N+P+    E
Sbjct:   3 QEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYDVDSE  62

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
            L  +F   G V    + ++R+  R RGF FV + T+E+AE A+  L+G  M  R + V 
Sbjct:  63 KLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN 122

Query: 144 RA 145
           +A
Sbjct: 123 KA 124

dbj|BAB74010.1| RNA-binding protein [Nostoc sp. PCC 7120]
ref|NP_486351.1| RNA-binding protein [Nostoc sp. PCC 7120]
pir||AH2094 RNA-binding protein [imported] - Nostoc sp. (strain PCC 7120)
dbj|BAA77713.1| RNA binding protein [Anabaena variabilis]
(105 aa)

Score: 51 bits (122), Expect: 1.1415e-05
Length: 78, Idn/Pos/Gap = 28/45/0 (35%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   QED+  +F  YG V  + +P DR+  R+RGFAFV + +  +  AAI 
Sbjct:   1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
            LDG+    R + V +A+
Sbjct:  61 GLDGAEWMGRDLKVNKAK  78

ref|ZP_00107052.1| COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
(104 aa)

Score: 51 bits (122), Expect: 1.1415e-05
Length: 78, Idn/Pos/Gap = 30/47/0 (38%/60%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   +EDL + F  YG V  + +P DR+  R RGFAFV +++  Q +AAI 
Sbjct:   1 MSIYVGNLSYQVTEEDLKQAFAEYGTVSRVQLPTDRETGRPRGFAFVEMESDTQEQAAID  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

ref|ZP_00161828.1| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
(103 aa)

Score: 51 bits (122), Expect: 1.1415e-05
Length: 78, Idn/Pos/Gap = 28/45/0 (35%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   QED+  +F  YG V  + +P DR+  R+RGFAFV + +  +  AAI 
Sbjct:   1 MSIYVGNLSYEVTQEDISNVFAEYGSVKRVVLPTDRETGRLRGFAFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
            LDG+    R + V +A+
Sbjct:  61 GLDGAEWMGRDLKVNKAK  78

emb|CAA44306.1| PR 264 [Gallus gallus]
sp|P30352|SFRS2_CHICK Splicing factor, arginine/serine-rich 2 (Splicing factor SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein)
ref|NP_001001305.1| arginine/serine-rich2 splicing factor [Gallus gallus]
prf||1805195A RNA-binding protein PR264
(221 aa)

Score: 51 bits (122), Expect: 1.15106e-05
Length: 113, Idn/Pos/Gap = 41/58/7 (36%/51%/6%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDG 176
           E A+ A+DG+ +  R + V+ A Y  G  P S H+     RRG   R   S G
Sbjct:  69 EDAMDAMDGAVLDGRELRVQMARY--GRPPDSHHS-----RRGPPPRRYGSSG 114

dbj|BAC65239.1| PIP-1 [Caenorhabditis elegans]
gb|AAA97963.1| Spindle orientation defective protein 4 [Caenorhabditis elegans]
ref|NP_504717.1| protein hexaribonucleotide binding like, SPiNdle orientation defective SPN-4, GEX (Gut on EXterior) Interacting protein GEI-20 (39.2 kD) (spn-4) [Caenorhabditis elegans]
pir||T29369 hypothetical protein ZC404.8 - Caenorhabditis elegans
(351 aa)

Score: 51 bits (122), Expect: 1.16071e-05
Length: 79, Idn/Pos/Gap = 33/46/2 (41%/58%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V NIPF  R++DL  +F  YG V+ + I  +   R  +GF FV L ++E  E A AAL
Sbjct:  53 IYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTND--RGSKGFGFVTLDSIESCEKARAAL 110

Query: 131 DGSTMRERIIAVKRAEYER 149
             S ++ RII V+RA   R
Sbjct: 111 HESHVQGRIIEVRRATPTR 129

pir||S15348 RNA-binding protein, 28K - spinach
(233 aa)

Score: 51 bits (122), Expect: 1.22029e-05
Length: 113, Idn/Pos/Gap = 36/54/3 (31%/47%/2%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYG  93
           +G  + G       A P+ S   P R    + + S  + V N+P+      L +LF  +G
Sbjct: 117 NGYDMDGRQLTVNKAAPRGS---PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHG 173

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            V+   +  DR+  R RGF FV + +  +   AIAALDG T+  R + V  AE
Sbjct: 174 KVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAE 226


Score: 44 bits (104), Expect: 0.00126244
Length: 126, Idn/Pos/Gap = 37/57/6 (29%/45%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNR------PSESELQNSVGLMVRNIPFG  79
           S   ++  + A L GE+  +GA    S     +          SE      L V N+P+ 
Sbjct:   6 SEWEQEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNLPYD  65

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
              E L  +F   G V    + ++R+  R RGF FV + T+E+AE A+  L+G  M  R 
Sbjct:  66 VDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQ 125

Query: 140 IAVKRA 145
           + V +A
Sbjct: 126 LTVNKA 131

ref|XP_593969.1| PREDICTED: similar to TLS-associated protein TASR-2, partial [Bos taurus]
(324 aa)

Score: 51 bits (122), Expect: 1.29369e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:  71 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL 130

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct: 131 HNLDRKWICGRQIEIQFAQGDR 152

emb|CAG87415.1| unnamed protein product [Debaryomyces hansenii CBS767]
ref|XP_459242.1| unnamed protein product [Debaryomyces hansenii]
(411 aa)

Score: 51 bits (122), Expect: 1.29369e-05
Length: 82, Idn/Pos/Gap = 26/50/1 (31%/60%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           ++++N+PF   ++D+LELF  +G +  + +P  +  +  RGFAFV    L++AE A+  L
Sbjct: 285 IIIKNLPFEATRKDVLELFGAFGQLKSVRVP-KKFDKSARGFAFVEFSLLKEAENAMNQL 343

Query: 131 DGSTMRERIIAVKRAEYERGEG 152
           +G  +  R + ++ AE + G+ 
Sbjct: 344 EGVHLLGRRLVMQYAEQDAGDA 365

ref|NP_705471.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
emb|CAD52708.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
(509 aa)

Score: 51 bits (122), Expect: 1.31546e-05
Length: 100, Idn/Pos/Gap = 31/56/2 (31%/56%/2%)

Query:  61 SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTL 120
           SES       L + ++P   +Q DL++ F P+G+++   I  ++   R RGFAFV   +L
Sbjct: 361 SESSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSL 420

Query: 121 EQAEAAIAALDG--STMRERIIAVKRAEYERGEGPVSQHA 158
           E A AAI+ ++G  +  ++  + VK+ E +  +  V+Q+ 
Sbjct: 421 ESAAAAISQMNGFMALNKKLKVTVKKGEEDEMKKYVNQNG 460


Score: 43 bits (100), Expect: 0.00441324
Length: 86, Idn/Pos/Gap = 27/46/3 (31%/53%/3%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L + ++P    ++++ E+F PYG V ++FI  D      +G +FV+    EQA  AI +L
Sbjct: 186 LFIGSLPKNITEDNIKEMFSPYGTVEEVFIMKDNSTGLGKGCSFVKFSYKEQALYAIKSL 245

Query: 131 DGSTMRE---RIIAVKRAEYERGEGP 153
           +G    E   R + V+ AE +  + P
Sbjct: 246 NGKKTLEGCTRPVEVRFAEPKSSKQP 271

ref|NP_440917.1| RNA-binding protein [Synechocystis sp. PCC 6803]
dbj|BAA17597.1| RNA-binding protein [Synechocystis sp. PCC 6803]
pir||S77263 RNA-binding protein ssr1480 - Synechocystis sp. (strain PCC 6803)
(83 aa)

Score: 51 bits (121), Expect: 1.38299e-05
Length: 77, Idn/Pos/Gap = 27/47/0 (35%/61%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   ++D+L +F  YG V  + +P DR+  R+RGF FV + + ++ +AAI 
Sbjct:   1 MSIYVGNLSYQATEDDVLTVFSEYGTVKRVQLPTDRETGRMRGFGFVEMSSDKEEDAAIE  60

Query: 129 ALDGSTMRERIIAVKRA 145
           ALDG+    R + V +A
Sbjct:  61 ALDGAEWMGRDLKVNKA  77

ref|XP_516977.1| PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Pan troglodytes]
(184 aa)

Score: 51 bits (121), Expect: 1.51593e-05
Length: 123, Idn/Pos/Gap = 38/58/5 (30%/47%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV  
Sbjct:  60 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY 119

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGR 177
            +   AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  
Sbjct: 120 YSRADAENAMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYRQDYD 174

Query: 178 STR 180
           + R
Sbjct: 175 AGR 177

dbj|BAC00787.1| glycine-rich RNA-binding protein [Physcomitrella patens]
(155 aa)

Score: 51 bits (121), Expect: 1.52863e-05
Length: 96, Idn/Pos/Gap = 36/49/4 (37%/51%/4%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + +GT  +++ E F  +G+V ++ I  DR   R RGF FV   T + AEAA+ AL
Sbjct:  44 LFVGGLAWGTTDDNIKEAFSAFGEVTEVKIICDRDTGRSRGFGFVTFATDQDAEAALQAL 103

Query: 131 DGSTMRERIIAVKRAEYERGEGPVS-QHAGASDGRR 165
           DG  +  R I   R  Y   + P   Q  G   GRR
Sbjct: 104 DGRDLAGRTI---RVNYATKQSPQDRQSGGGMYGRR 136

gb|AAH46880.1| Non-POU domain containing, octamer-binding [Danio rerio]
ref|NP_963873.1| non-POU domain containing, octamer-binding [Danio rerio]
(441 aa)

Score: 51 bits (121), Expect: 1.55436e-05
Length: 120, Idn/Pos/Gap = 43/57/7 (35%/47%/5%)

Query:  28 TAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLE  87
           T  DS    T  GE +   A      + F  +P E        L V N+P GT +ED+ +
Sbjct:  32 TGADSNGQHTDAGEQSSPNAGFTIDLQNF-KKPGEKTYTQRSRLFVGNLPAGTTEEDVEK  90

Query:  88 LFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           LF  YG   +IFI  D      RGF F+RL+T   A+ A A LD +  R R I V+ A +
Sbjct:  91 LFSKYGKASEIFINKD------RGFGFIRLETKTLADIAKAELDDTIFRGRQIRVRFATH 144

gb|AAH83529.1| Ncbp2 protein [Danio rerio]
(155 aa)

Score: 51 bits (121), Expect: 1.59375e-05
Length: 114, Idn/Pos/Gap = 39/55/5 (34%/48%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L+ S  L V N+ F T +E + ELF   GDV  I I  D+  +   GF FV   T  
Sbjct:  32 EKLLKQSATLYVGNLSFYTTEEQVHELFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRA  91

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSD 175
            AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D
Sbjct:  92 DAENAMRFVNGTRLDDRII---RTDWDAGFKEGRQYGWGKSG--GQVRDEYRQD 140

emb|CAE59091.1| Hypothetical protein CBG02383 [Caenorhabditis briggsae]
(195 aa)

Score: 51 bits (121), Expect: 1.60711e-05
Length: 97, Idn/Pos/Gap = 32/50/0 (32%/51%/0%)

Query:  53 SRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGF 112
           SR   +R +  ++     L + N+ + T   DL  +F  YGD+ D+ IP D+  R+ +GF
Sbjct:   2 SRGGGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRVFERYGDIGDVHIPRDKYSRQSKGF  61

Query: 113 AFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
            FVR      AE A+   DG  +  R + V  A+Y+R
Sbjct:  62 GFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDR  98

gb|EAK83384.1| hypothetical protein UM02346.1 [Ustilago maydis 521]
ref|XP_399961.1| hypothetical protein UM02346.1 [Ustilago maydis 521]
(858 aa)

Score: 51 bits (121), Expect: 1.60711e-05
Length: 77, Idn/Pos/Gap = 27/42/0 (35%/54%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++  S  L +RN+PF    +++L  F  +G V  + IP D+Q +  +G AFV       A
Sbjct: 309 QIMESGRLFIRNLPFAASGDEILAFFESFGTVKQVHIPLDKQTKASKGLAFVSFSDPAHA 368

Query: 124 EAAIAALDGSTMRERII 140
            AA  A DGST + R++
Sbjct: 369 LAAYRAKDGSTFQGRLL 385

emb|CAB55987.1| hypothetical protein [Homo sapiens]
ref|NP_057280.1| RNA binding motif protein 19 [Homo sapiens]
(960 aa)

Score: 51 bits (121), Expect: 1.60711e-05
Length: 115, Idn/Pos/Gap = 30/59/0 (26%/51%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +L  S  L VRN+P+ + +EDL +LF  YG + ++  P D   ++ +GFAF+     E A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRS 178
             A + +DG   + R++ V  +  ++     +   G+S  ++ +  + + +   S
Sbjct: 457 VKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASS 511

emb|CAE21256.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
ref|NP_894912.1| RNA-binding protein RbpD [Prochlorococcus marinus str. MIT 9313]
(111 aa)

Score: 51 bits (121), Expect: 1.66165e-05
Length: 75, Idn/Pos/Gap = 29/40/0 (38%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ F   QEDLL+LF  YG+V    +P DR+  R RGFAFV +      + AI  L
Sbjct:   3 IYIGNLSFQAEQEDLLDLFSQYGEVKTCSLPLDRETGRKRGFAFVEMTNDADEQKAIDDL  62

Query: 131 DGSTMRERIIAVKRA 145
                  R+I V +A
Sbjct:  63 QDVEWMGRMIRVNKA  77

ref|ZP_00158842.1| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
(109 aa)

Score: 50 bits (120), Expect: 1.79123e-05
Length: 78, Idn/Pos/Gap = 30/45/0 (38%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + + N+ +   +EDL   F  YG V  + +P DR+  R RGFAFV ++T  Q  AAI 
Sbjct:   1 MSIYIGNLSYQVTEEDLKLAFAEYGKVSRVQLPTDRETGRPRGFAFVEMETEAQETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

gb|AAH06137.1| RBM19 protein [Homo sapiens]
gb|AAH04289.1| RBM19 protein [Homo sapiens]
(960 aa)

Score: 50 bits (120), Expect: 1.83664e-05
Length: 115, Idn/Pos/Gap = 30/59/0 (26%/51%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +L  S  L VRN+P+ + +EDL +LF  YG + ++  P D   ++ +GFAF+     E A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRS 178
             A + +DG   + R++ V  +  ++     +   G+S  ++ +  + + +   S
Sbjct: 457 VKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASS 511

gb|EAL33619.1| GA18884-PA [Drosophila pseudoobscura]
(188 aa)

Score: 50 bits (120), Expect: 1.86754e-05
Length: 79, Idn/Pos/Gap = 34/44/0 (43%/55%/0%)

Query:  75 NIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGST 134
           N+ + T  EDL  +F   G+V DI+IP DR  R  RGFAFVR      AE A+ A+DG  
Sbjct:  30 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFYDKRDAEDALEAMDGRM  89

Query: 135 MRERIIAVKRAEYERGEGP 153
           +  R + V+ A Y R   P
Sbjct:  90 LDGRELRVQMARYGRPSSP 108

emb|CAE07438.1| putativeRNA-binding protein RbpD [Synechococcus sp. WH 8102]
ref|NP_897016.1| putativeRNA-binding protein RbpD [Synechococcus sp. WH 8102]
(96 aa)

Score: 50 bits (120), Expect: 1.91488e-05
Length: 75, Idn/Pos/Gap = 28/40/0 (37%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ F   QE L +LF  YG+V +  +P DR+  R RGFAFV +   E  + AI  L
Sbjct:   3 IYIGNLSFQAEQEHLFDLFSEYGEVKNCSLPLDRETGRKRGFAFVEMVNDEDEQKAIDDL  62

Query: 131 DGSTMRERIIAVKRA 145
                  R+I V +A
Sbjct:  63 QEVEWMGRMIRVSKA  77

gb|AAD00176.1| eIF3-p44 [Mus musculus]
(320 aa)

Score: 50 bits (120), Expect: 1.96342e-05
Length: 109, Idn/Pos/Gap = 36/54/5 (33%/49%/4%)

Query:  43 TEQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVID  97
           ++ G   P S R  P R  ES   N     +  + V N+   TR+ DL ELFRP+G +  
Sbjct: 208 SKTGKYVPPSLRDGPARRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR 267

Query:  98 IFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           I++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 268 IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

gb|AAP36198.1| Homo sapiens nuclear cap binding protein subunit 2, 20kDa [synthetic construct]
gb|AAX43646.1| nuclear cap binding protein subunit 2 [synthetic construct]
(157 aa)

Score: 50 bits (120), Expect: 1.97987e-05
Length: 123, Idn/Pos/Gap = 38/58/5 (30%/47%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV  
Sbjct:  29 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY  88

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGR 177
            +   AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  
Sbjct:  89 YSRADAENAMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYRQDYD 143

Query: 178 STR 180
           + R
Sbjct: 144 AGR 146

emb|CAD18921.1| RNA-binding protein precursor [Persea americana]
(300 aa)

Score: 50 bits (120), Expect: 1.99646e-05
Length: 99, Idn/Pos/Gap = 33/55/3 (33%/55%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ +R   +RP  +  + +  + V N+P+      L ++F  +G V++  + +DR+  
Sbjct: 197 AAPRGARV--DRPPRA-FEPAFRMYVGNLPWQVDDARLEQVFSEHGKVVEARVVYDRETG 253

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV + T  + + AIAALDG ++  R I V  AE
Sbjct: 254 RSRGFGFVTMSTQTELDDAIAALDGQSLDGRAIRVNVAE 292


Score: 44 bits (103), Expect: 0.0018531
Length: 114, Idn/Pos/Gap = 32/55/6 (28%/48%/5%)

Query:  32 SPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRP  91
           + SGA    E+   G  +      +P  P E++L       V N+P+    + L ELF  
Sbjct:  90 TESGAEDGEESGGDGFVEGGEEDSYPLPPEEAKL------FVGNLPYDVDHQALAELFDQ 143

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            G V    + ++R+  + RGF FV + T+E+AE A+   +   +  R++ V +A
Sbjct: 144 AGTVEVAEVIYNRETDQSRGFGFVTMSTVEEAEKAVEMFNRYDINGRLLTVNKA 197

sp|Q9Y4C8|K0682_HUMAN Probable RNA-binding protein KIAA0682
(960 aa)

Score: 50 bits (120), Expect: 2.01318e-05
Length: 115, Idn/Pos/Gap = 30/59/0 (26%/51%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +L  S  L VRN+P+ + +EDL +LF  YG + ++  P D   ++ +GFAF+     E A
Sbjct: 397 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 456

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRS 178
             A + +DG   + R++ V  +  ++     +   G+S  ++ +  + + +   S
Sbjct: 457 VKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASS 511

dbj|BAA31657.2| KIAA0682 protein [Homo sapiens]
(973 aa)

Score: 50 bits (120), Expect: 2.06421e-05
Length: 115, Idn/Pos/Gap = 30/59/0 (26%/51%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +L  S  L VRN+P+ + +EDL +LF  YG + ++  P D   ++ +GFAF+     E A
Sbjct: 410 DLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHA 469

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRS 178
             A + +DG   + R++ V  +  ++     +   G+S  ++ +  + + +   S
Sbjct: 470 VKAYSEVDGQVFQGRMLHVLPSTIKKEASEDASALGSSSYKKKKEAQDKANSASS 524

ref|XP_535779.1| PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Canis familiaris]
gb|AAP35488.1| nuclear cap binding protein subunit 2, 20kDa [Homo sapiens]
emb|CAA58962.1| subunit of the dimeric cap binding complex CBC [Homo sapiens]
gb|AAX31978.1| nuclear cap binding protein subunit 2 [synthetic construct]
ref|XP_588096.1| PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Bos taurus]
gb|AAH01255.1| Nuclear cap binding protein subunit 2, 20kDa [Homo sapiens]
gb|AAW78992.1| GekBS146P [Gekko japonicus]
sp|P52298|NCBP2_HUMAN Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1)
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) In Complex With A Cap Analogue M7gpppg
pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc) In Complex With A Cap Analogue M7gpppg
ref|NP_031388.2| nuclear cap binding protein subunit 2, 20kDa [Homo sapiens]
prf||2118330A cap-binding protein
(156 aa)

Score: 50 bits (120), Expect: 2.06421e-05
Length: 123, Idn/Pos/Gap = 38/58/5 (30%/47%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV  
Sbjct:  29 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY  88

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGR 177
            +   AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  
Sbjct:  89 YSRADAENAMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYRQDYD 143

Query: 178 STR 180
           + R
Sbjct: 144 AGR 146

ref|XP_417837.1| PREDICTED: similar to neural specific sr protein NSSR 1 [Gallus gallus]
(203 aa)

Score: 50 bits (120), Expect: 2.11653e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

ref|XP_373341.1| PREDICTED: similar to PR264/SC35 [Homo sapiens]
(104 aa)

Score: 50 bits (120), Expect: 2.17018e-05
Length: 68, Idn/Pos/Gap = 25/36/0 (36%/52%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           ++    L V N+   T    L  +F+ YG + D++IPWDR  R+ R F F+      Q E
Sbjct:  10 VEGMTSLKVDNLTNRTSANTLRAVFKKYGSMGDVYIPWDRITRQSRRFTFILFHFKHQVE  69

Query: 125 AAIAALDG 132
            A+ ALDG
Sbjct:  70 DAMDALDG  77

ref|ZP_00160724.1| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
dbj|BAA08403.1| RNA-binding protein [Anabaena variabilis]
dbj|BAB75721.1| RNA-binding protein [Nostoc sp. PCC 7120]
ref|NP_488062.1| RNA-binding protein [Nostoc sp. PCC 7120]
pir||AG2308 RNA-binding protein [imported] - Nostoc sp. (strain PCC 7120)
(94 aa)

Score: 50 bits (119), Expect: 2.28159e-05
Length: 76, Idn/Pos/Gap = 28/44/0 (36%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ +   + DL  +F  YG+V  + +P DR+  R+RGFAFV +    Q +AAI  L
Sbjct:   3 IYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL  62

Query: 131 DGSTMRERIIAVKRAE 146
           DG+    R + V +A+
Sbjct:  63 DGAEWMGRQLRVNKAK  78

ref|ZP_00327989.1| COG0724: RNA-binding proteins (RRM domain) [Trichodesmium erythraeum IMS101]
(102 aa)

Score: 50 bits (119), Expect: 2.28159e-05
Length: 98, Idn/Pos/Gap = 32/50/0 (32%/51%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   Q+DL E+F  YG V  + +P DR+  R RGF FV + +  + + AI 
Sbjct:   1 MSIYVGNLSYDVTQDDLSEVFAEYGTVKRVQLPTDRETGRPRGFGFVEMSSENEEQKAIE  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRG 166
           ALDG+    R I V +A+     G       + +  RG
Sbjct:  61 ALDGAEWMGRDIKVNKAKPREDRGSGGNRRNSPNYSRG  98

ref|NP_080830.1| nuclear cap binding protein subunit 2 [Mus musculus]
ref|XP_213591.1| PREDICTED: similar to nuclear cap binding protein subunit 2 [Rattus norvegicus]
sp|Q9CQ49|NCBP2_MOUSE Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20)
dbj|BAC37030.1| unnamed protein product [Mus musculus]
dbj|BAB28389.1| unnamed protein product [Mus musculus]
dbj|BAB26004.1| unnamed protein product [Mus musculus]
(156 aa)

Score: 50 bits (119), Expect: 2.28159e-05
Length: 123, Idn/Pos/Gap = 38/58/5 (30%/47%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV  
Sbjct:  29 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY  88

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGR 177
            +   AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  
Sbjct:  89 YSRADAENAMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYREDYD 143

Query: 178 STR 180
           + R
Sbjct: 144 AGR 146

gb|EAA14200.2| ENSANGP00000015053 [Anopheles gambiae str. PEST]
ref|XP_318916.2| ENSANGP00000015053 [Anopheles gambiae str. PEST]
(305 aa)

Score: 50 bits (119), Expect: 2.31999e-05
Length: 124, Idn/Pos/Gap = 37/62/23 (29%/50%/18%)

Query:  85 LLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKR 144
           + + F P+GD++DI +P D + ++ RGFAF+  +  E A AA+  ++ S +  R I V  
Sbjct:  22 ITDAFIPFGDLVDIQMPIDYESQKHRGFAFIEFENAEDAAAAVDNMNDSELCGRTIRVNT  81

Query: 145 AEYER-GEG---PV-------SQHAGAS---DGRRGQSR---------RPRRSDGRSTRR 181
           A+ +R  EG   PV        +HAGA+   DG  G  +         +P+       ++
Sbjct:  82 AKPQRIKEGSNRPVWADDNWLQKHAGATLKNDGENGAEQPMDTGTDEVQPKEPKAAEEKK 141

Query: 182 RRPR 185
           R P+
Sbjct: 142 RNPQ 145

gb|AAH77024.1| Nuclear cap binding protein subunit 2, 20kDa [Xenopus tropicalis]
ref|NP_001006879.1| nuclear cap binding protein subunit 2, 20kDa [Xenopus tropicalis]
(153 aa)

Score: 50 bits (119), Expect: 2.37879e-05
Length: 119, Idn/Pos/Gap = 39/58/5 (32%/48%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L++S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV   T  
Sbjct:  30 ECLLKHSCTLYVGNLSFYTTEEQIHELFSKSGDVKKIVMGLDKIKKTACGFCFVEYYTRT  89

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
            AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  + R
Sbjct:  90 DAEQAMRFINGTRLDDRII---RTDWDAGFKEGRQYGRGKSG--GQVRDEYRQDYDAGR 143

dbj|BAA35092.1| neural specific sr protein NSSR 1 [Mus musculus]
(262 aa)

Score: 50 bits (119), Expect: 2.39872e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAH90660.1| hypothetical protein [Pongo pygmaeus]
(262 aa)

Score: 50 bits (119), Expect: 2.54299e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAI14807.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
gb|AAL16666.1| TLS-associated protein TASR-2 [Homo sapiens]
(261 aa)

Score: 50 bits (119), Expect: 2.54299e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAG83649.1| unnamed protein product [Yarrowia lipolytica CLIB99]
ref|XP_499726.1| hypothetical protein [Yarrowia lipolytica]
(701 aa)

Score: 50 bits (119), Expect: 2.60745e-05
Length: 116, Idn/Pos/Gap = 37/60/9 (31%/51%/7%)

Query:  38 LIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-------LMVRNIPFGTRQ-EDLLELF  89
           L G+  +   AKP+  +   +RP ES   N+         L+VRN+P+  R+ +DL+++F
Sbjct:  80 LKGKILQIEFAKPRERKTREDRPFESSGDNNTSVEKRKPRLIVRNLPWSVREPQDLIKVF 139

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
             YG V+D FIP      ++ GF FV +   + A+ A+A   G  +  R + V  A
Sbjct: 140 SKYGKVVDAFIPRGAG-GKMSGFGFVTMSKKQHADKAVAESKGLEIDGRTVTVDFA 194

dbj|BAD96714.1| FUS interacting protein (serine-arginine rich) 1 isoform 2 variant [Homo sapiens]
(262 aa)

Score: 50 bits (119), Expect: 2.6293e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAH77253.1| conserved hypothetical protein [Plasmodium chabaudi]
(254 aa)

Score: 50 bits (119), Expect: 2.83435e-05
Length: 119, Idn/Pos/Gap = 30/60/1 (25%/50%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           ++N   L++RN+ F T  + + ++F  +G + D+++P D   RR RGF FV     + A+
Sbjct:   2 VENGCSLLIRNLSFETSPDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAK  61

Query: 125 AAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRR 183
            A+  L+ S +  + I +  A+  R + P +     ++    + R  +  +    +RRR
Sbjct:  62 EALNILNNSKIDGKEIRIIVAQNRR-KSPDTMKKYHNNLNESKYRSHKYENNIREKRRR 119

ref|NP_197382.3| SC35-like splicing factor, 28 kD (SCL28) [Arabidopsis thaliana]
(236 aa)

Score: 50 bits (119), Expect: 2.88204e-05
Length: 114, Idn/Pos/Gap = 35/57/2 (30%/50%/1%)

Query:  59 RPSESELQNS--VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           RPS  + ++S   GL++RN+P   R  DL + F  +G + DI++P +      RGF FV+
Sbjct:  35 RPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVK  94

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRR 170
            +  E A  A+  ++   +  R IA+  AE  R      +    + GR G  +R
Sbjct:  95 YRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKR 148

ref|XP_540454.1| PREDICTED: similar to PTDSR protein [Canis familiaris]
(661 aa)

Score: 50 bits (119), Expect: 2.90619e-05
Length: 68, Idn/Pos/Gap = 28/39/0 (41%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      AE A+ A+
Sbjct:   4 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM  63

Query: 131 DGSTMRER 138
           DG+ +  R
Sbjct:  64 DGAVLDGR  71

ref|NP_473357.1| FUS interacting protein (serine-arginine rich) 1 isoform 2 [Homo sapiens]
emb|CAI14808.1| FUS interacting protein (serine-arginine rich) 1 [Homo sapiens]
gb|AAH83082.1| Fusip1 protein [Mus musculus]
gb|AAC26727.1| TLS-associated protein TASR-2 [Homo sapiens]
gb|AAC26715.1| TLS-associated protein TASR-2 [Mus musculus]
gb|AAH05039.1| FUS interacting protein (serine-arginine rich) 1, isoform 2 [Homo sapiens]
gb|AAL57514.1| SRrp40 [Homo sapiens]
gb|AAL06099.1| TLS-associated SR protein 2 [Homo sapiens]
sp|Q9R0U0|FUSIP_MOUSE FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural specific SR protein) (Neural-salient serine/arginine-rich protein)
sp|O75494|FUSIP_HUMAN FUS interacting serine-arginine rich protein 1 (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor protein) (SRrp40) (Splicing factor SRp38)
gb|AAN65380.1| splicing factor SRp38 [Homo sapiens]
gb|AAH43060.1| Fusip1 protein [Mus musculus]
dbj|BAB29286.1| unnamed protein product [Mus musculus]
(262 aa)

Score: 50 bits (119), Expect: 2.93054e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

gb|AAX70033.1| RNA-binding protein, putative [Trypanosoma brucei]
(340 aa)

Score: 50 bits (118), Expect: 2.97985e-05
Length: 107, Idn/Pos/Gap = 35/59/4 (32%/55%/3%)

Query:  66 QNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL-RRIRGFAFVRLQTLEQAE 124
           Q+   L+V  IP    +EDL ELFRP+G ++ + I  DR+     +G+ FVR + +E A 
Sbjct:   5 QDPRNLIVNYIPTPVTEEDLEELFRPFGPLVSVRIICDRENGNHPKGYGFVRYKFVESAM  64

Query: 125 AAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRP 171
            A++ ++G ++  + + V +A    G    SQ AG++  R+   R P
Sbjct:  65 NAMSRMNGYSINNKRLRVTQAT---GPRKYSQAAGSTSVRQPGPRAP 108

gb|EAL65101.1| hypothetical protein DDB0186128 [Dictyostelium discoideum]
(895 aa)

Score: 50 bits (118), Expect: 3.02999e-05
Length: 81, Idn/Pos/Gap = 25/46/0 (30%/56%/0%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           + ++  S  + VRN+ + T++EDL ++F  +G + +I IP D   ++ +G AF+     E
Sbjct: 354 DEDVGESGRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPE 413

Query: 122 QAEAAIAALDGSTMRERIIAV 142
            A  A+  +DG   + R+I V
Sbjct: 414 NAVQALNDMDGKVFQGRLIHV 434


Score: 48 bits (113), Expect: 0.000139498
Length: 109, Idn/Pos/Gap = 32/56/8 (29%/51%/7%)

Query:  41 ETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFI 100
           E  E      KS+   PN+PS         ++++N+PF +  +++ +LF  YG++  + I
Sbjct: 774 ELPENSKQSIKSNGGQPNKPSSK-------IIIKNLPFESTIKEIRKLFTAYGEIQSVRI 826

Query: 101 PWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
           P  +     RGF FV   T E+A+ A+ AL  S    R + ++ AE ++
Sbjct: 827 P-KKPNGGHRGFGFVEFLTEEEAKNAMEALGNSHFYGRHLVLQYAEQDK 874

gb|EAA22401.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana, putative [Plasmodium yoelii yoelii]
(440 aa)

Score: 50 bits (118), Expect: 3.08098e-05
Length: 80, Idn/Pos/Gap = 27/46/5 (33%/57%/6%)

Query:  58 NRPSESELQNSVG-----LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGF 112
           N P+   L +S G     L + ++P   +Q DL++ F P+G+++   I  ++   R RGF
Sbjct: 283 NNPNIHNLSDSSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGF 342

Query: 113 AFVRLQTLEQAEAAIAALDG 132
           AFV  + +E A AAI+ ++G
Sbjct: 343 AFVSYENIESAAAAISQMNG 362

emb|CAE05198.3| OSJNBa0070C17.5 [Oryza sativa (japonica cultivar-group)]
emb|CAE03574.2| OSJNBa0085I10.19 [Oryza sativa (japonica cultivar-group)]
ref|XP_473857.1| OSJNBa0085I10.19 [Oryza sativa (japonica cultivar-group)]
(904 aa)

Score: 50 bits (118), Expect: 3.08098e-05
Length: 81, Idn/Pos/Gap = 27/49/2 (33%/60%/2%)

Query:  66 QNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEA 125
           ++S  L+VRN+ F   ++DL +LF P+G +  + +P   +    RGFAFV   T ++A+ 
Sbjct: 778 KSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLP--MKFGSHRGFAFVEFVTKQEAQN 835

Query: 126 AIAALDGSTMRERIIAVKRAE 146
           A+ AL  + +  R + ++RA+
Sbjct: 836 ALQALASTHLYGRHLVIERAK 856

ref|XP_393252.1| similar to SD14970p [Apis mellifera]
(3420 aa)

Score: 50 bits (118), Expect: 3.26629e-05
Length: 76, Idn/Pos/Gap = 24/45/0 (31%/59%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           L+ S  + +RN+ + T ++D+ +LF  YG + ++ +P DR  R+++GF  +     E A 
Sbjct: 461 LKKSGRMFIRNLSYTTTEDDIRKLFEKYGPLTEVNLPIDRITRKLKGFGTITFLMTEHAV 520

Query: 125 AAIAALDGSTMRERII 140
            A + LDGS +  R++
Sbjct: 521 KAYSELDGSILDGRML 536


Score: 44 bits (103), Expect: 0.00174797
Length: 94, Idn/Pos/Gap = 29/52/2 (30%/55%/2%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDR-QLRRIRGFAFVRL 117
           + S  + Q    +++RN+PF    E++ ELF+ +G++  + +P     + + RGFAFV  
Sbjct: 869 KTSTVKAQTGTKILIRNVPFQATAEEITELFKAFGELKAVRLPKKLVGVEKHRGFAFVEY 928

Query: 118 QTLEQAEAAIAALDGST-MRERIIAVKRAEYERG 150
            T  +A+ A  AL  ST +  R + ++ A+ E G
Sbjct: 929 YTKSEAKKAFKALCQSTHLYGRRLVLEWAQTEEG 962

emb|CAF95006.1| unnamed protein product [Tetraodon nigroviridis]
(154 aa)

Score: 50 bits (118), Expect: 3.29366e-05
Length: 122, Idn/Pos/Gap = 42/59/7 (34%/48%/5%)

Query:  56 FPNRPSESE--LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFA 113
           F  + SE E  L+ +  L V N+ F T +E + ELF   GDV  I I  D+  +   GF 
Sbjct:  24 FKGKCSEQEKLLKTTHTLYVGNLSFYTTEEQVHELFSKSGDVKRIIIGLDKVKKTACGFC  83

Query: 114 FVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRR 173
           FV   T   AE A+  L+G+ + +RII   R +++ G     Q+     G  GQ R   R
Sbjct:  84 FVEYYTRAGAENAMRFLNGTRLDDRII---RTDWDAGFKEGRQYGRGKSG--GQVRDEYR 138

Query: 174 SD 175
            D
Sbjct: 139 QD 140

dbj|BAA06520.1| cp31 [Arabidopsis thaliana]
(314 aa)

Score: 50 bits (118), Expect: 3.29366e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 211 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 267

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 268 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 306

gb|AAL07519.1| RNA-binding protein precursor [Solanum tuberosum]
(339 aa)

Score: 50 bits (118), Expect: 3.37714e-05
Length: 83, Idn/Pos/Gap = 30/46/0 (36%/55%/0%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           +S  L V  + +GT +  L E F  YG+VI+  +  DR+  R RGF F+   + E+A +A
Sbjct:  38 SSSKLFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSA  97

Query: 127 IAALDGSTMRERIIAVKRAEYER 149
           + A+DG  +  R I V  A  +R
Sbjct:  98 MQAMDGQDLHGRRIKVNYATEKR 120

gb|AAQ00242.1| RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
ref|NP_875589.1| RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
(98 aa)

Score: 50 bits (118), Expect: 3.37714e-05
Length: 76, Idn/Pos/Gap = 29/40/0 (38%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ F   QED++ +F  YG+V D  IP DR+  R RGFAFV +      + AI  L
Sbjct:   3 IFIGNLSFDAEQEDIIGVFTSYGEVKDCKIPLDRETGRKRGFAFVEMVNEADEQKAIDDL  62

Query: 131 DGSTMRERIIAVKRAE 146
                  R I V +AE
Sbjct:  63 QDVEWMGRNIRVNKAE  78

dbj|BAA06521.1| cp31 [Arabidopsis thaliana]
(304 aa)

Score: 50 bits (118), Expect: 3.49176e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 201 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 257

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 258 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 296

gb|AAX07527.1| unknown [Prosthecobacter dejongeii]
(111 aa)

Score: 50 bits (118), Expect: 3.55051e-05
Length: 75, Idn/Pos/Gap = 27/38/0 (36%/50%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+PF   + +L  LF  YG V D+ +P D    R RGFAFV + +      AI AL
Sbjct:   7 MYVGNLPFTAMESELRALFNDYGTVTDMHLPMDHATGRPRGFAFVTMDSAMAMNEAITAL  66

Query: 131 DGSTMRERIIAVKRA 145
           +G     R + +  A
Sbjct:  67 NGKDFGGRSLTINEA  81

emb|CAA11893.1| cp31BHv [Hordeum vulgare subsp. vulgare]
pir||T05727 nucleic acid-binding protein - barley
(283 aa)

Score: 50 bits (118), Expect: 3.67101e-05
Length: 99, Idn/Pos/Gap = 34/53/4 (34%/53%/4%)

Query:  47 AAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           AA+  S    P R   S  +  VG    N+P+      L+++F  +G+V++  I +DR+ 
Sbjct: 181 AAQRGSRVERPPRQFASSFRAYVG----NLPWQAEDSRLVQMFSEHGEVVNATIVYDRET 236

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            R RGF FV + + E  ++AI+ALDG  M  R + V  A
Sbjct: 237 GRSRGFGFVTMASKEDLDSAISALDGQEMDGRPLRVNVA 275

emb|CAG60192.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_447259.1| unnamed protein product [Candida glabrata]
(416 aa)

Score: 50 bits (118), Expect: 3.73279e-05
Length: 121, Idn/Pos/Gap = 34/54/2 (28%/44%/1%)

Query:  63 SELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQ 122
           +E  ++  L V ++      E L   FR +   I   + WD Q  R RG+ FV     E+
Sbjct: 140 AENDDTFNLFVGDLNVDVDDETLAGTFREFPTFIQAHVMWDMQTGRSRGYGFVSFSNQEE 199

Query: 123 AEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRR 182
           A+ A+ A+ G  +  R I +  A   + E  +  + G + G RG + RP  + G   R  
Sbjct: 200 AQKAMDAMQGKDLSGRQIRINWA--TKRERNMGNNFGNNRGSRGGNFRPYGNQGHHNRNN 257

Query: 183 R 183
           R
Sbjct: 258 R 258

gb|AAA18380.1| RNA-binding protein 3
(162 aa)

Score: 50 bits (118), Expect: 3.7956e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct:  59 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 115

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 116 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 154

gb|AAN28804.1| At4g24770/F22K18_30 [Arabidopsis thaliana]
gb|AAK95304.1| AT4g24770/F22K18_30 [Arabidopsis thaliana]
(329 aa)

Score: 50 bits (118), Expect: 3.8274e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 226 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 282

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321

gb|AAH72902.1| Unknown (protein for MGC:80352) [Xenopus laevis]
(153 aa)

Score: 50 bits (118), Expect: 3.85947e-05
Length: 119, Idn/Pos/Gap = 39/58/5 (32%/48%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           ES L+ S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV   T  
Sbjct:  30 ESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRA  89

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
            AE A+  ++G+ + +RI+   R +++ G     Q+     G  GQ R   R D  + R
Sbjct:  90 DAEQAMRFINGTRLDDRIV---RTDWDAGFKEGRQYGRGKSG--GQVRDEYRQDYDAGR 143

emb|CAB78428.1| RNA-binding protein like [Arabidopsis thaliana]
emb|CAB36850.1| RNA-binding protein like [Arabidopsis thaliana]
pir||T05255 RNA-binding protein homolog F18A5.250 - Arabidopsis thaliana
(126 aa)

Score: 49 bits (117), Expect: 3.89181e-05
Length: 65, Idn/Pos/Gap = 26/39/1 (40%/60%/1%)

Query:  80 TRQEDLL-ELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRER 138
           T  +D+L E F  YG+V+D  +  DR   R RGF FV   +  +AEAA++ +DG  +  R
Sbjct:  52 TTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGR 111

Query: 139 IIAVK 143
            ++VK
Sbjct: 112 RVSVK 116

ref|YP_011428.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
gb|AAS96688.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
(89 aa)

Score: 49 bits (117), Expect: 3.89181e-05
Length: 83, Idn/Pos/Gap = 33/47/2 (39%/56%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+PF   ++D+  LF  YG+V+ + +  DR+  R RGF FV +   + A AAI AL
Sbjct:   5 LYVGNLPFSASEDDVRSLFTNYGEVVSVKLIMDRETGRPRGFGFVEMNDGD-AGAAIEAL  63

Query: 131 DGSTMRERIIAVKRAEYERGEGP 153
           DG+    R + V  A+ ER   P
Sbjct:  64 DGADFMGRALRVNEAQ-ERAPRP  85

dbj|BAB09396.1| RNA-binding protein-like [Arabidopsis thaliana]
gb|AAL76138.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
ref|NP_199836.1| 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana]
gb|AAK63972.1| AT5g50250/K6A12_11 [Arabidopsis thaliana]
(289 aa)

Score: 49 bits (117), Expect: 3.99045e-05
Length: 99, Idn/Pos/Gap = 34/47/3 (34%/47%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP            +  + V N+P+      L  LF  +G V+D  +  DR+  
Sbjct: 189 AAPRGSRP---ERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETG 245

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV++    +   AIAALDG  +  R I V  AE
Sbjct: 246 RSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAE 284


Score: 43 bits (100), Expect: 0.00441324
Length: 101, Idn/Pos/Gap = 32/48/7 (31%/47%/6%)

Query:  56 FPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFV 115
           FP  P E++L       V N+P+    + L  LF   G V    + ++R   + RGF FV
Sbjct: 106 FPEPPEEAKL------FVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFV 159

Query: 116 RLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQ 156
            + T+E+AE A+   +   +  R + V RA   RG  P  Q
Sbjct: 160 TMSTVEEAEKAVEKFNSFEVNGRRLTVNRAA-PRGSRPERQ 199

ref|XP_533919.1| PREDICTED: similar to cytosine-5-methyltransferase [Canis familiaris]
(2083 aa)

Score: 49 bits (117), Expect: 4.02389e-05
Length: 108, Idn/Pos/Gap = 35/53/5 (32%/49%/4%)

Query:   44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI   98
            + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 1972 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 2031

Query:   99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE  146
            ++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 2032 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 2079

gb|AAH46695.1| MGC53149 protein [Xenopus laevis]
(258 aa)

Score: 49 bits (117), Expect: 4.02389e-05
Length: 99, Idn/Pos/Gap = 36/52/1 (36%/52%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRNI    R EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+  L
Sbjct:  12 LFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALHNL  71

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSR 169
           D   +  R I ++ A+ +R + P    A       G SR
Sbjct:  72 DKKWICGRQIEIQFAQGDR-KTPHQMKAKEGSSTYGSSR 109

emb|CAH25380.1| putative glycine-rich RNA-binding protein [Guillardia theta]
(152 aa)

Score: 49 bits (117), Expect: 4.0916e-05
Length: 73, Idn/Pos/Gap = 27/40/0 (36%/54%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V  +P+    EDL +LF  +G + D  + +DR+  R RGF FV        EAAI A+D 
Sbjct:  65 VSGLPWALTSEDLRDLFAEFGAIQDANVVYDRETGRSRGFGFVTFAESADCEAAITAMDK 124

Query: 133 STMRERIIAVKRA 145
           + +  R + VK+A
Sbjct: 125 ANIGGRTVLVKQA 137

emb|CAI00313.1| RNA binding protein, putative [Plasmodium berghei]
(318 aa)

Score: 49 bits (117), Expect: 4.19531e-05
Length: 80, Idn/Pos/Gap = 27/46/5 (33%/57%/6%)

Query:  58 NRPSESELQNSVG-----LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGF 112
           N P+   L +S G     L + ++P   +Q DL++ F P+G+++   I  ++   R RGF
Sbjct: 161 NNPNIHNLSDSSGPPGANLFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGF 220

Query: 113 AFVRLQTLEQAEAAIAALDG 132
           AFV  + +E A AAI+ ++G
Sbjct: 221 AFVSYENIESAAAAISQMNG 240

ref|XP_519086.1| PREDICTED: similar to Splicing factor, arginine/serine-rich, 46kD [Pan troglodytes]
(583 aa)

Score: 49 bits (117), Expect: 4.19531e-05
Length: 138, Idn/Pos/Gap = 45/67/8 (32%/48%/5%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct: 299 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRSDA 358

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH---AGASDGRRGQSRRPRRSDGRSTR 180
           + A AA+DG+ +  R + V+ A Y R + P S     +G S G R   R         ++
Sbjct: 359 QDAEAAMDGAVLDGRELRVQMARYGRRDLPRSSQEEPSGRSWGGRYGRRSRSPRGRHRSQ 418

Query: 181 RRRP-----RSRSFEGGN 193
            R P     RSRS  GG+
Sbjct: 419 SRGPSYSKSRSRSHYGGS 436

gb|EAA58540.1| hypothetical protein AN6722.2 [Aspergillus nidulans FGSC A4]
ref|XP_410859.1| hypothetical protein AN6722.2 [Aspergillus nidulans FGSC A4]
(1039 aa)

Score: 49 bits (117), Expect: 4.23046e-05
Length: 115, Idn/Pos/Gap = 37/56/1 (32%/48%/0%)

Query:  30 KDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELF  89
           ++SPSG+    + T+ G+ +        NR     +     L V N+P+  + ED+ ELF
Sbjct: 713 EESPSGSRSPSQDTQNGSPRRTPGFGRQNREVPQAISEGRRLYVGNMPYTAKMEDVQELF 772

Query:  90 RPYG-DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
              G +V+ I I  D    R   + FV L T E AE A+A LDG  +  R + +K
Sbjct: 773 TRGGFEVVRIDISIDPFSGRNPSYCFVDLSTKELAERAMAELDGGDLLGRPVRIK 827

ref|NP_001016749.1| hypothetical protein LOC549503 [Xenopus tropicalis]
(310 aa)

Score: 49 bits (117), Expect: 4.26591e-05
Length: 135, Idn/Pos/Gap = 41/68/8 (30%/50%/5%)

Query:  14 STGDG--AHGGDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGL  71
           STGD   A G +     A  S +G  +     + G+ + +S +P  NR ++    ++  +
Sbjct: 178 STGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQP--NRRAD----DNATI 231

Query:  72 MVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALD 131
            V N+   TR+ DL ELFRP+G +  I++  D+   + +GFAF+     E A  AIA + 
Sbjct: 232 RVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 291

Query: 132 GSTMRERIIAVKRAE 146
           G      I+ V+ A+
Sbjct: 292 GFGYDHLILNVEWAK 306

emb|CAI41005.1| paraspeckle component 1 [Homo sapiens]
(248 aa)

Score: 49 bits (117), Expect: 4.26591e-05
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  72 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 125

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 126 SRTLAEIAKAELDGTILKSRPLRIRFATH 154

emb|CAB79387.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
emb|CAA22986.1| RNA-binding protein RNP-T precursor [Arabidopsis thaliana]
emb|CAA46347.1| RNA-binding protein [Arabidopsis thaliana]
ref|NP_194208.1| 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana]
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31)
gb|AAA32860.1| 31 kDa RNA binding protein
prf||1921382A RNA-binding protein
gb|AAA18378.1| RNA-binding protein 1
(329 aa)

Score: 49 bits (117), Expect: 4.4849e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 226 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 282

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 283 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 321

gb|AAM51001.1| RE44625p [Drosophila melanogaster]
(411 aa)

Score: 49 bits (117), Expect: 4.52248e-05
Length: 96, Idn/Pos/Gap = 32/50/6 (33%/52%/6%)

Query:  50 PKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRI 109
           P    P    P++++      L V N+   T  +DL E+F+PYG++ DIF   ++     
Sbjct:  27 PTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKN----  82

Query: 110 RGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
             F F+RL   + AE A  ALDGS  + R++ V+ A
Sbjct:  83 --FTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFA 116

gb|AAH75190.1| Eif3s4-prov protein [Xenopus laevis]
(308 aa)

Score: 49 bits (117), Expect: 4.52248e-05
Length: 135, Idn/Pos/Gap = 41/68/8 (30%/50%/5%)

Query:  14 STGDG--AHGGDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGL  71
           STGD   A G +     A  S +G  +     + G+ + +S +P  NR ++    ++  +
Sbjct: 176 STGDKEKAPGAEPEPAQAPVSKTGKYVPPSLRDGGSRRGESMQP--NRRAD----DNATI 229

Query:  72 MVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALD 131
            V N+   TR+ DL ELFRP+G +  I++  D+   + +GFAF+     E A  AIA + 
Sbjct: 230 RVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 289

Query: 132 GSTMRERIIAVKRAE 146
           G      I+ V+ A+
Sbjct: 290 GFGYDHLILNVEWAK 304

dbj|BAA04177.1| ss-DNA binding protein 12RNP2 precursor [Synechococcus sp. PCC 6301]
(100 aa)

Score: 49 bits (117), Expect: 4.56037e-05
Length: 86, Idn/Pos/Gap = 29/49/0 (33%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ F   +ED+ E+F  YG V  + +P DR+  R+RGFAF+ ++     +AAI+ L
Sbjct:   3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRGFAFIEMEEDAHEDAAISEL  62

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQ 156
           DG+    R + V +A  +    P ++
Sbjct:  63 DGAEWFGRQLRVSKARPKDDRRPAAR  88

pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain From Hypothetical Protein Bab23448
(99 aa)

Score: 49 bits (117), Expect: 4.59858e-05
Length: 72, Idn/Pos/Gap = 26/41/0 (36%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRN+ + + +EDL +LF  YG + ++  P D   ++ +GFAFV     E A  A A +
Sbjct:  11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV  70

Query: 131 DGSTMRERIIAV 142
           DG   + R++ V
Sbjct:  71 DGQVFQGRMLHV  82

emb|CAC03601.1| SC35-like splicing factor SCL28, 28 kD [Arabidopsis thaliana]
(236 aa)

Score: 49 bits (117), Expect: 4.59858e-05
Length: 114, Idn/Pos/Gap = 35/57/2 (30%/50%/1%)

Query:  59 RPSESELQNS--VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           RPS  + ++S   GL++RN+P   R  DL + F  +G + DI++P +      RGF FV+
Sbjct:  35 RPSSRDHESSGPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNFNSGEPRGFGFVK  94

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRR 170
            +  E A  A+  ++   +  R IA+  AE  R      +    + GR G  +R
Sbjct:  95 YRYAEDAAEAMKRMNHKVIGGREIAIVFAEENRKTPQEMRTTNGTSGRHGDYKR 148

gb|AAA18379.1| RNA-binding protein 2
(315 aa)

Score: 49 bits (117), Expect: 4.67597e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 212 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 268

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 269 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 307

emb|CAG30979.1| hypothetical protein [Gallus gallus]
(262 aa)

Score: 49 bits (117), Expect: 4.71514e-05
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAE07879.1| RNA-binding protein [Synechococcus sp. WH 8102]
ref|NP_897457.1| RNA-binding protein [Synechococcus sp. WH 8102]
(85 aa)

Score: 49 bits (117), Expect: 4.71514e-05
Length: 79, Idn/Pos/Gap = 29/42/0 (36%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ +   +EDL+ LF  YG+V    +P DR+  R RGFAFV L      ++AI  L
Sbjct:   7 IFIGNLSWDAEREDLVHLFSQYGEVSKCSLPLDRETGRKRGFAFVDLANAADEKSAIDDL  66

Query: 131 DGSTMRERIIAVKRAEYER 149
                  R I V++AE  R
Sbjct:  67 QDVEWMGRGITVRQAEPRR  85

gb|AAH84490.1| Hypothetical LOC496509 [Xenopus tropicalis]
ref|NP_001011096.1| hypothetical LOC496509 [Xenopus tropicalis]
(258 aa)

Score: 49 bits (117), Expect: 4.99874e-05
Length: 82, Idn/Pos/Gap = 31/47/0 (37%/57%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRNI    R EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDKKWICGRQIEIQFAQGDR  90

dbj|BAC04206.1| unnamed protein product [Homo sapiens]
(186 aa)

Score: 49 bits (117), Expect: 5.04062e-05
Length: 115, Idn/Pos/Gap = 39/54/7 (33%/46%/6%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPV----SQHAGASDGRRGQSRRPRRS 174
           E A+ A+DG+      +A   A   R  GP          + D   G S  PRRS
Sbjct:  69 EDAMDAMDGAVPG---LAADLATAARSLGPALVLDLGRPPSPDPHEGPSPSPRRS 120

ref|NP_442740.1| RNA binding protein [Synechocystis sp. PCC 6803]
gb|AAA85379.1| RNA binding protein [Synechocystis sp. PCC 6803]
dbj|BAA10811.1| RNA binding protein [Synechocystis sp. PCC 6803]
sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein rbpA
(101 aa)

Score: 49 bits (116), Expect: 5.12544e-05
Length: 78, Idn/Pos/Gap = 28/44/0 (35%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   + DL  +F  YG V  + +P DR+  R+RGF FV L+   +  AAI 
Sbjct:   1 MSIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
ref|NP_200911.1| RNA-binding protein, putative [Arabidopsis thaliana]
gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
(309 aa)

Score: 49 bits (116), Expect: 5.16839e-05
Length: 79, Idn/Pos/Gap = 28/43/0 (35%/54%/0%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           +S  L +  + +   ++ L E F  YG+V+D  +  DR+  R RGF FV   + E A +A
Sbjct:  38 SSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA  97

Query: 127 IAALDGSTMRERIIAVKRA 145
           I ALDG  +  R++ V  A
Sbjct:  98 IQALDGRDLHGRVVKVNYA 116

emb|CAG33553.1| PSPC1 [Homo sapiens]
dbj|BAA91924.1| unnamed protein product [Homo sapiens]
ref|NP_060752.1| paraspeckle protein 1 [Homo sapiens]
(357 aa)

Score: 49 bits (116), Expect: 5.16839e-05
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  36 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE  89

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct:  90 SRTLAEIAKAELDGTILKSRPLRIRFATH 118

emb|CAF91282.1| unnamed protein product [Tetraodon nigroviridis]
(193 aa)

Score: 49 bits (116), Expect: 5.21169e-05
Length: 89, Idn/Pos/Gap = 35/45/6 (39%/50%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P G  +EDL  LF  YG   +IFI       + RGF F+RL+
Sbjct:  52 KPGEKTFTQRSRLFVGNLPAGVIEEDLERLFAKYGKASEIFI------NKERGFGFIRLE 105

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           T   AE A A LD +  R R I V+ A +
Sbjct: 106 TRIIAEIARAELDDTPFRGRPIRVRFATH 134

dbj|BAA09599.1| NCBP interacting protein 1 [Homo sapiens]
(156 aa)

Score: 49 bits (116), Expect: 5.29939e-05
Length: 123, Idn/Pos/Gap = 37/58/5 (30%/47%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV  
Sbjct:  29 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEY  88

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGR 177
            +   AE ++  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  
Sbjct:  89 YSRADAENSMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYRQDYD 143

Query: 178 STR 180
           + R
Sbjct: 144 AGR 146

emb|CAB01702.1| Hypothetical protein F26A3.2 [Caenorhabditis elegans]
ref|NP_492130.1| nuclear cap binding protein like (1I218) [Caenorhabditis elegans]
pir||T21382 hypothetical protein F26A3.2 - Caenorhabditis elegans
(154 aa)

Score: 49 bits (116), Expect: 5.34379e-05
Length: 117, Idn/Pos/Gap = 38/58/5 (32%/49%/4%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R  E+ L+ S  L V N+ + T+++ + ELF   GDV  + +  DR  +   GF FV   
Sbjct:  27 RDQETALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYY  86

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSD 175
           T E AE A+  +  + M +R+I   RA+++ G     Q+     G  GQ R   R D
Sbjct:  87 TREDAELALQNISNTRMDDRVI---RADWDAGFIEGRQYGRGKHG--GQVRDEYRKD 138

gb|AAK68298.1| Sr protein (splicing factor) protein 4, isoform b [Caenorhabditis elegans]
ref|NP_495014.1| serine/aRginine rich pre-mRNA SPlicing factor, Serpin (rsp-4) [Caenorhabditis elegans]
(126 aa)

Score: 49 bits (116), Expect: 5.47924e-05
Length: 92, Idn/Pos/Gap = 30/47/0 (32%/51%/0%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           +R +  ++     L + N+ + T   DL   F  YGD+ D+ IP D+  R+ +GF FVR 
Sbjct:   8 DRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF  67

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
                AE A+   DG  +  R + V  A+Y+R
Sbjct:  68 YERRDAEHALDRTDGKLVDGRELRVTLAKYDR  99

emb|CAA63557.1| RNA-binding protein [Anabaena variabilis]
(102 aa)

Score: 49 bits (116), Expect: 5.47924e-05
Length: 78, Idn/Pos/Gap = 28/44/0 (35%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   + DL  +F  YG V  + +P DR+  R RGFAFV + T  + +AAI 
Sbjct:   1 MSIYVGNLSYEVTENDLKGVFAEYGTVKRVQVPQDRETGRPRGFAFVEMGTDAEEDAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
            LDG+    R + V +A+
Sbjct:  61 GLDGAEWMGRDLKVNKAK  78

pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
(98 aa)

Score: 49 bits (116), Expect: 5.61813e-05
Length: 93, Idn/Pos/Gap = 30/49/4 (32%/52%/4%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           N   E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+ ++   GF FV  
Sbjct:   8 NEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-MKTACGFCFVEY  66

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYERG 150
            +   AE A+  ++G+ + +RII   R +++ G
Sbjct:  67 YSRADAENAMRYINGTRLDDRII---RTDWDAG  96

ref|ZP_00162211.1| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
dbj|BAA09050.1| RNA-binding protein RbpB [Anabaena variabilis]
dbj|BAB74627.1| RNA-binding protein [Nostoc sp. PCC 7120]
ref|NP_486968.1| RNA-binding protein [Nostoc sp. PCC 7120]
pir||AI2171 RNA-binding protein [imported] - Nostoc sp. (strain PCC 7120)
pir||S58675 RNA-binding protein RbpB - Anabaena variabilis
pir||S44025 RNA-binding protein - Anabaena sp
gb|AAA67898.1| RNA-binding protein
(103 aa)

Score: 49 bits (116), Expect: 5.61813e-05
Length: 78, Idn/Pos/Gap = 27/44/0 (34%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   +E L  +F  YG V  + +P DR+  R+RGF FV + +  +  AAI 
Sbjct:   1 MSIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

emb|CAC42098.1| RBD protein [Chironomus tentans]
(849 aa)

Score: 49 bits (116), Expect: 5.6652e-05
Length: 114, Idn/Pos/Gap = 30/55/1 (26%/48%/0%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E ++  S  L  RN+P+   ++D+  +F  YG+V+++ +P D   R+I+GF  V     E
Sbjct: 310 EEDICESGKLFFRNLPYTVTEDDVQTVFEKYGNVVEVNVPIDPTTRKIKGFGTVTFLMPE 369

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEY-ERGEGPVSQHAGASDGRRGQSRRPRRS 174
            A  A   L+G+    R+  +   +  ++ E   S      D RR + ++   S
Sbjct: 370 NAVQAYNELNGTMFHGRMFHLLPGKSNDKTEADESDPKNFKDKRRKELKKTASS 423


Score: 45 bits (105), Expect: 0.000974716
Length: 110, Idn/Pos/Gap = 28/56/1 (25%/50%/0%)

Query:  66 QNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEA 125
           + S  +MVRNIPF     ++ +LF+ +G++  + +P    + + RGF F+   T   A++
Sbjct: 718 EGSTKIMVRNIPFQANANEIRQLFQVFGELKAVRLPKKPGIDQHRGFGFIDFVTKSDAKS 777

Query: 126 AIAALDGST-MRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRS 174
           A  AL  ST +  R + ++ A  E     + +      G   +++R +++
Sbjct: 778 AFDALHHSTHLYGRRLVLEWAATEEDVTEIRKRTAKDVGGGTKAKRSKKA 827

gb|EAA21552.1| dentin phosphoryn [Plasmodium yoelii yoelii]
(793 aa)

Score: 49 bits (116), Expect: 5.95603e-05
Length: 85, Idn/Pos/Gap = 25/47/0 (29%/55%/0%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           ++N   L++RN+ F T  + + ++F  +G + D+++P D   RR RGF FV     + A+
Sbjct:   2 VENGCSLLIRNLSFETSPDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAK  61

Query: 125 AAIAALDGSTMRERIIAVKRAEYER 149
            A+  L+ S +  + I +  A+  R
Sbjct:  62 EALNILNNSKIDGKEIRIIVAQNRR  86

pir||T16961 RNA-binding protein RGP-3 - wood tobacco (fragment)
dbj|BAA11089.1| RGP-3 [Nicotiana sylvestris]
(144 aa)

Score: 49 bits (116), Expect: 5.95603e-05
Length: 79, Idn/Pos/Gap = 30/42/0 (37%/53%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L V  + +GT  + L + F  +GDV+D  +  DR   R RGF FV     E A  AI
Sbjct:  37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAI  96

Query: 128 AALDGSTMRERIIAVKRAE 146
            A+DG  ++ R I V+ A+
Sbjct:  97 KAMDGQELQGRNIRVRIAQ 115

ref|YP_076669.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
dbj|BAD41825.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
(86 aa)

Score: 49 bits (116), Expect: 5.95603e-05
Length: 80, Idn/Pos/Gap = 32/42/0 (40%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+P+ T  EDL  LF PYG+V +  I  DR+  R RGF FV +   E A  AIA L
Sbjct:   5 IYVGNLPWSTTPEDLRALFEPYGEVENARIITDRETGRSRGFGFVDMADEEAARRAIAEL  64

Query: 131 DGSTMRERIIAVKRAEYERG 150
                  R + V  A+  +G
Sbjct:  65 HNYEYGGRPLTVNEAQARQG  84

gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
(277 aa)

Score: 49 bits (116), Expect: 6.36717e-05
Length: 83, Idn/Pos/Gap = 31/45/0 (37%/54%/0%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           +S  L V  + +GT +  L E F  YGDVI+  +  DR   R RGF F+   + E+A +A
Sbjct:  38 SSSKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASA  97

Query: 127 IAALDGSTMRERIIAVKRAEYER 149
           + A+DG  +  R I V  A  +R
Sbjct:  98 LQAMDGQDLHGRRIRVNYATEKR 120

gb|AAH37591.1| Fusip1 protein [Mus musculus]
(261 aa)

Score: 48 bits (115), Expect: 6.75012e-05
Length: 82, Idn/Pos/Gap = 30/48/0 (36%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   T+ EDL   F  YG ++D+++P D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADDTQSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             LD   +  R I ++ A+ +R
Sbjct:  69 HNLDRKWICGRQIEIQFAQGDR  90

emb|CAA43420.1| RNA binding protein [Arabidopsis thaliana]
pir||S49030 RNA-binding protein RNP-D precursor - Arabidopsis thaliana  (fragment)
(310 aa)

Score: 48 bits (115), Expect: 7.03769e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 207 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 263

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 264 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 302

gb|AAH66442.1| Hypothetical protein MGC65772 [Danio rerio]
gb|AAH56275.1| Zgc:65772 protein [Danio rerio]
ref|NP_956827.1| hypothetical protein MGC65772 [Danio rerio]
(248 aa)

Score: 48 bits (115), Expect: 7.15611e-05
Length: 110, Idn/Pos/Gap = 38/56/13 (34%/50%/11%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRNI   +R EDL   F  YG ++D++IP D   RR RGFA+++ + +  AE A+  L
Sbjct:  12 LFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYIQFEDVRDAEDALHNL  71

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           D   +  R I ++ A+ +R                GQ +   RS  RS+R
Sbjct:  72 DRKWVCGRQIEIQFAQGDRKT-------------PGQMKNKERSSPRSSR 108

gb|EAL49670.1| hypothetical protein 37.t00027 [Entamoeba histolytica HM-1:IMSS]
(685 aa)

Score: 48 bits (115), Expect: 7.3375e-05
Length: 116, Idn/Pos/Gap = 36/61/7 (31%/52%/6%)

Query:  37 TLIGETTEQGAAKPKSSRP------FPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFR  90
           TL G+  +  A + + S+P         R    E + S  L+V+N+PF T  +++ ELFR
Sbjct: 566 TLQGKVIDGHAVQIEISQPKVKDEDHKERKEIEEHKVSNKLLVKNVPFETNIKEVRELFR 625

Query:  91 PYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            YG +  + +P  +   + +GFAFV   T ++A  A+AAL  S    R + ++ A+
Sbjct: 626 TYGTLRGVRLP-KKVDGQNKGFAFVEYATKQEAANAMAALKNSHFYGRHLIIEYAK 680


Score: 45 bits (106), Expect: 0.000896688
Length: 91, Idn/Pos/Gap = 23/47/3 (25%/51%/3%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+PF   ++D+ + F  +G++ +I +P D+  ++ +GF FV     + A  A   +
Sbjct: 189 IYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKACNEM 248

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGAS 161
           D   ++ RI+ V    Y + +   +Q  G S
Sbjct: 249 DNKFIKGRIVHVT---YAKADPYSNQQVGES 276

gb|AAH14184.2| PSPC1 protein [Homo sapiens]
emb|CAI41003.1| paraspeckle component 1 [Homo sapiens]
gb|AAL59602.1| paraspeckle protein 1 beta isoform [Homo sapiens]
(393 aa)

Score: 48 bits (115), Expect: 7.3375e-05
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  72 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 125

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 126 SRTLAEIAKAELDGTILKSRPLRIRFATH 154

pir||S41505 12RNP2 protein - Synechococcus sp. (PCC 6301)
dbj|BAA09863.1| 12kDa RNA-binding, 12RNP2 [Synechococcus sp.]
(100 aa)

Score: 48 bits (115), Expect: 7.46097e-05
Length: 86, Idn/Pos/Gap = 29/49/0 (33%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ F   +ED+ E+F  YG V  + +P DR+  R+RGFAF+ ++     +AAI+ L
Sbjct:   3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPDDRETGRLRGFAFIEMEEDAHEDAAISEL  62

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQ 156
           DG+    R + V +A  +    P ++
Sbjct:  63 DGAEWFGRQLRVSKARPKDDRRPAAR  88

gb|AAH82427.1| MGC83338 protein [Xenopus laevis]
(308 aa)

Score: 48 bits (115), Expect: 7.52349e-05
Length: 109, Idn/Pos/Gap = 35/54/5 (32%/49%/4%)

Query:  43 TEQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVID  97
           ++ G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  
Sbjct: 196 SKTGKYVPPSLRDGGSRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR 255

Query:  98 IFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           I++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 256 IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 304

gb|AAC46767.1| Sr protein (splicing factor) protein 4, isoform a [Caenorhabditis elegans]
sp|Q09511|RSP4_CAEEL Probable splicing factor, arginine/serine-rich 4 (RNA-binding protein srp-2) (CeSC35)
ref|NP_495013.1| serine/aRginine rich pre-mRNA SPlicing factor, Serpin (22.6 kD) (rsp-4) [Caenorhabditis elegans]
(196 aa)

Score: 48 bits (115), Expect: 7.65009e-05
Length: 92, Idn/Pos/Gap = 30/47/0 (32%/51%/0%)

Query:  58 NRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRL 117
           +R +  ++     L + N+ + T   DL   F  YGD+ D+ IP D+  R+ +GF FVR 
Sbjct:   8 DRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRF  67

Query: 118 QTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
                AE A+   DG  +  R + V  A+Y+R
Sbjct:  68 YERRDAEHALDRTDGKLVDGRELRVTLAKYDR  99

ref|XP_483743.1| putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
ref|XP_507331.1| PREDICTED OJ1150_A11.19-2 gene product [Oryza sativa (japonica cultivar-group)]
dbj|BAD09078.1| putative nucleic acid-binding protein [Oryza sativa (japonica cultivar-group)]
(305 aa)

Score: 48 bits (115), Expect: 7.65009e-05
Length: 99, Idn/Pos/Gap = 34/53/5 (34%/53%/5%)

Query:  48 AKPKSSR-PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           A P+ SR   P R      +  VG    N+P+      LL+LF  +G+V++  + +DR+ 
Sbjct: 203 AAPRGSRVERPPRQFAPAFRAYVG----NLPWQVDDSRLLQLFSEHGEVVNASVVYDRES 258

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            R RGF FV + + E+ + AI+ALDG  +  R + V  A
Sbjct: 259 GRSRGFGFVSMASKEELDDAISALDGQELDGRPLRVNVA 297


Score: 42 bits (99), Expect: 0.00571598
Length: 90, Idn/Pos/Gap = 31/47/2 (34%/52%/2%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+P+    E L +LF   G V    + ++R+  + RGF FV + T+E+A+ AI  L+ 
Sbjct: 131 VGNLPYDVDSEGLAQLFEQAGVVEVAEVIYNRETGQSRGFGFVTMSTIEEADKAIEMLNR 190

Query: 133 STMRERIIAVKRA--EYERGEGPVSQHAGA 160
             +  R++ V RA     R E P  Q A A
Sbjct: 191 YDINGRLLNVNRAAPRGSRVERPPRQFAPA 220

gb|AAH51781.1| Hypothetical protein MGC56258 [Danio rerio]
ref|NP_956615.1| hypothetical protein MGC56258 [Danio rerio]
(864 aa)

Score: 48 bits (115), Expect: 7.77882e-05
Length: 102, Idn/Pos/Gap = 29/55/6 (28%/53%/5%)

Query:  41 ETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFI 100
           E+ + G  K     P P +  E+       L++RN+ F    ++L ++F  +G V++  I
Sbjct: 101 ESQKSGETKNTEKIPSPTKKKENSW-----LIIRNLSFKCEDDELKQIFSKFGTVLETRI 155

Query: 101 PWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
           P     ++ +GFAFV+ + + +AE A AA++   +R+R + V
Sbjct: 156 PLKPDGKK-KGFAFVQFKCVSEAEKARAAMNRKAIRDRPVEV 196


Score: 48 bits (113), Expect: 0.000125159
Length: 75, Idn/Pos/Gap = 25/47/1 (33%/62%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL ++F  +G V++  IP     ++ RGFAFV  + + +A  A+ A+
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKK-RGFAFVLFKRMPEAGKALTAM 296

Query: 131 DGSTMRERIIAVKRA 145
           +G  +++R +AV  A
Sbjct: 297 NGKKIKDRQVAVDWA 311

ref|ZP_00179649.1| COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
(94 aa)

Score: 48 bits (115), Expect: 8.11021e-05
Length: 82, Idn/Pos/Gap = 29/44/0 (35%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V NI +    EDL E+F  YG V  + +P DR+  + RGF FV +   ++  AAI  L
Sbjct:   3 IYVGNISYDVTPEDLTEVFGDYGTVKRVSLPTDRETGKPRGFGFVEMDNDDEETAAIEEL  62

Query: 131 DGSTMRERIIAVKRAEYERGEG 152
           DG+    R + V +A+    +G
Sbjct:  63 DGAEWLGRQMRVNKAKPRENKG  84

pir||S58674 RNA-binding protein RbpD - Anabaena variabilis (fragment)
(93 aa)

Score: 48 bits (115), Expect: 8.52656e-05
Length: 76, Idn/Pos/Gap = 27/44/0 (35%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ +   + +L  +F  YG+V  + +P DR+  R+RGFAFV +    Q +AAI  L
Sbjct:   2 IYVGNLSYRATEAELKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITEL  61

Query: 131 DGSTMRERIIAVKRAE 146
           DG+    R + V +A+
Sbjct:  62 DGAEWMGRQLRVNKAK  77

emb|CAC01929.1| translation initiation factor 3, subunit g (eIF3g) [Arabidopsis thaliana]
gb|AAM91455.1| AT3g11400/F24K9_7 [Arabidopsis thaliana]
gb|AAL67121.1| AT3g11400/F24K9_7 [Arabidopsis thaliana]
gb|AAL16140.1| AT3g11400/F24K9_7 [Arabidopsis thaliana]
gb|AAG51445.1| putative eukaryotic translation initiation factor 3 subunit; 21071-22901 [Arabidopsis thaliana]
ref|NP_187747.1| eukaryotic translation initiation factor 3G / eIF3g [Arabidopsis thaliana]
(294 aa)

Score: 48 bits (115), Expect: 8.598e-05
Length: 137, Idn/Pos/Gap = 38/62/6 (27%/45%/4%)

Query:   9 SAPPSSTGDGAHGGDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNS  68
           +AP     D    G+S + +A      A  +  +   GA +         R  E+ ++  
Sbjct: 159 AAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVR-- 216

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
               V N+   TR+ DL+ELF P+G V  +++  D++    RGF FV   + E A+ AI 
Sbjct: 217 ----VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G      I+ V+ A
Sbjct: 273 KLNGYGYDNLILRVEWA 289

ref|NP_058572.2| eukaryotic translation initiation factor 3, subunit 4 (delta) [Mus musculus]
gb|AAH08511.1| Eukaryotic translation initiation factor 3, subunit 4 (delta) [Mus musculus]
gb|AAF14221.1| eukaryotic translation initiation factor 3 p42 subunit [Mus musculus]
sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g)
dbj|BAC29952.1| unnamed protein product [Mus musculus]
(320 aa)

Score: 48 bits (114), Expect: 8.67004e-05
Length: 109, Idn/Pos/Gap = 35/54/5 (32%/49%/4%)

Query:  43 TEQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVID  97
           ++ G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  
Sbjct: 208 SKTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISR 267

Query:  98 IFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           I++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 268 IYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

pir||S20940 DNA-binding protein - Arabidopsis thaliana
(246 aa)

Score: 48 bits (114), Expect: 9.03939e-05
Length: 99, Idn/Pos/Gap = 32/52/3 (32%/52%/3%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP     +    + +  + V N+P+      L +LF  +G V++  + +DR+  
Sbjct: 143 AAPRGSRP---ERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETG 199

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +  +++   AI+ALDG  +  R I V  AE
Sbjct: 200 RSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAE 238

ref|ZP_00105894.1| COG0724: RNA-binding proteins (RRM domain) [Nostoc punctiforme PCC 73102]
(109 aa)

Score: 48 bits (114), Expect: 9.26852e-05
Length: 78, Idn/Pos/Gap = 26/45/0 (33%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   Q+ L  +F  YG V  + +P DR+  R+RGFAFV + + ++   AI 
Sbjct:   1 MSIYVGNLSYEVTQDALSTVFAEYGSVKRVQLPTDRETGRLRGFAFVEMSSEDEETKAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           +LDG+    R + V +A+
Sbjct:  61 SLDGAEWMGRDLKVNKAK  78

gb|AAP36240.1| Homo sapiens eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [synthetic construct]
gb|AAX43875.1| eukaryotic translation initiation factor 3 subunit 4 delta [synthetic construct]
gb|AAX43874.1| eukaryotic translation initiation factor 3 subunit 4 delta [synthetic construct]
(321 aa)

Score: 48 bits (114), Expect: 9.82598e-05
Length: 108, Idn/Pos/Gap = 35/53/5 (32%/49%/4%)

Query:  44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           ++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

ref|XP_423502.1| PREDICTED: similar to cold inducible RNA binding protein; cold inducible RNA-binding protein; glycine-rich RNA binding protein; Cold-inducible RNA-binding protein, partial [Gallus gallus]
(300 aa)

Score: 48 bits (114), Expect: 0.000101595
Length: 75, Idn/Pos/Gap = 24/46/0 (32%/61%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L+V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct: 136 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 195

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct: 196 NGKSVDGRQIRVDQA 210

emb|CAG12187.1| unnamed protein product [Tetraodon nigroviridis]
(296 aa)

Score: 48 bits (114), Expect: 0.000105923
Length: 131, Idn/Pos/Gap = 40/60/9 (30%/45%/6%)

Query:  25 LSHTAKDSPSGAT----LIGETTEQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRN  75
           LS   KD P+G+     +     + G   P S R    R  ES   N     +  + V N
Sbjct: 162 LSTADKDKPAGSAEPEPVQPAQNKTGKYVPPSLRDGGTRRGESMQPNRRADDNATIRVTN 221

Query:  76 IPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTM 135
           +   TR+ DL ELFRP+G +  I++  D+   + +GFAF+     E A  AI  + G   
Sbjct: 222 LSEDTREADLQELFRPFGAISRIYLAKDKNTGQSKGFAFISFHRREDASRAITGVSGFGY 281

Query: 136 RERIIAVKRAE 146
              I+ V+ A+
Sbjct: 282 DHLILNVEWAK 292

emb|CAG33415.1| EIF3S4 [Homo sapiens]
(320 aa)

Score: 48 bits (114), Expect: 0.000105923
Length: 108, Idn/Pos/Gap = 35/53/5 (32%/49%/4%)

Query:  44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           ++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

gb|AAP35535.1| eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Homo sapiens]
gb|AAX32269.1| eukaryotic translation initiation factor 3 subunit 4 delta [synthetic construct]
gb|AAX32268.1| eukaryotic translation initiation factor 3 subunit 4 delta [synthetic construct]
gb|AAH00733.1| Eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Homo sapiens]
gb|AAH08469.1| Eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Homo sapiens]
sp|O75821|IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g)
gb|AAB71866.1| eukaryotic translation initiation factor 3 subunit [Homo sapiens]
gb|AAG15396.1| eukaryotic translation initiation factor 3 subunit p42/p44 [Homo sapiens]
gb|AAG15419.1| eukaryotic translation initiation factor 3 subunit p42/p44 [Homo sapiens]
ref|NP_003746.2| eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Homo sapiens]
(320 aa)

Score: 48 bits (114), Expect: 0.000105923
Length: 108, Idn/Pos/Gap = 35/53/5 (32%/49%/4%)

Query:  44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           ++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

emb|CAF94406.1| unnamed protein product [Tetraodon nigroviridis]
(98 aa)

Score: 48 bits (114), Expect: 0.000108607
Length: 84, Idn/Pos/Gap = 30/49/2 (35%/58%/2%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR--LQTLEQAEA 125
           +  L VRNI   +R EDL   F  YG ++D++IP D   R+ RGFA+++   + +  AE 
Sbjct:   9 NTSLFVRNISDESRPEDLRREFGRYGPIVDVYIPLDFYTRQPRGFAYIQYIFEDVRDAED  68

Query: 126 AIAALDGSTMRERIIAVKRAEYER 149
           A+ +LD   +  R I ++ A+ +R
Sbjct:  69 ALHSLDRKWVCGRQIEIQFAQGDR  92

ref|XP_509555.1| PREDICTED: similar to paraspeckle protein 1 alpha isoform [Pan troglodytes]
(537 aa)

Score: 48 bits (114), Expect: 0.000109517
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  72 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 125

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 126 SRTLAEIAKAELDGTILKSRPLRIRFATH 154

gb|AAM28218.1| nuclear cap binding protein subunit 2 [Danio rerio]
ref|NP_775356.1| nuclear cap binding protein subunit 2 [Danio rerio]
(155 aa)

Score: 48 bits (114), Expect: 0.00011136
Length: 114, Idn/Pos/Gap = 38/54/5 (33%/47%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L+ S  L V N+ F T +E +  LF   GDV  I I  D+  +   GF FV   T  
Sbjct:  32 EKLLKQSATLYVGNLSFYTTEEQVHVLFAKCGDVKRIIIGLDKIKKTACGFCFVEYYTRA  91

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSD 175
            AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D
Sbjct:  92 DAENAMRFVNGTRLDDRII---RTDWDAGFKEGRQYGRGKSG--GQVRDEYRQD 140

emb|CAE74453.1| Hypothetical protein CBG22194 [Caenorhabditis briggsae]
(153 aa)

Score: 48 bits (113), Expect: 0.000114183
Length: 117, Idn/Pos/Gap = 38/57/5 (32%/48%/4%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           R  E  L+ S  L V N+ + T+++ + ELF   GDV  + +  DR  +   GF FV   
Sbjct:  27 RDQELALRTSCTLYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYY  86

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSD 175
           T E AE A+  +  + M +R+I   RA+++ G     Q+     G  GQ R   R D
Sbjct:  87 TREDAELALQNISNTRMDDRVI---RADWDAGFVEGRQYGRGKHG--GQVRDEYRKD 138

gb|AAM65439.1| putative eukaryotic translation initiation factor 3 subunit [Arabidopsis thaliana]
gb|AAG53636.1| initiation factor 3g [Arabidopsis thaliana]
(294 aa)

Score: 48 bits (113), Expect: 0.00011514
Length: 137, Idn/Pos/Gap = 38/62/6 (27%/45%/4%)

Query:   9 SAPPSSTGDGAHGGDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNS  68
           +AP     D    G+S + +A      A  +  +   GA +         R  E+ ++  
Sbjct: 159 AAPTDVFIDKPPTGESSTMSAAPGTGKAAYVPPSMRAGADRSAVGSDMRRRNDENSVR-- 216

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
               V N+   TR+ DL+ELF P+G V  +++  D++    RGF FV   + E A+ AI 
Sbjct: 217 ----VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAIN 272

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G      I+ V+ A
Sbjct: 273 KLNGYGYDNLILRVEWA 289

emb|CAG09903.1| unnamed protein product [Tetraodon nigroviridis]
(326 aa)

Score: 48 bits (113), Expect: 0.000116104
Length: 61, Idn/Pos/Gap = 26/36/0 (42%/59%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+IDI IP D +  + RGFAF+  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDLIDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNMNESELFGRTIRVNIAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|NP_001013113.1| eukaryotic translation initiation factor 3, subunit 4 (delta) (predicted) [Rattus norvegicus]
gb|AAH86383.1| Eukaryotic translation initiation factor 3, subunit 4 (delta) (predicted) [Rattus norvegicus]
(320 aa)

Score: 48 bits (113), Expect: 0.000121051
Length: 108, Idn/Pos/Gap = 35/53/5 (32%/49%/4%)

Query:  44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           ++  D+   + +GFAF+     E A  AIA + G      I+ V+ A+
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 316

gb|AAP92553.1| Ab1-210 [Rattus norvegicus]
(255 aa)

Score: 48 bits (113), Expect: 0.000122065
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|NP_925272.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
dbj|BAC90267.1| RNA-binding protein [Gloeobacter violaceus PCC 7421]
(101 aa)

Score: 48 bits (113), Expect: 0.000123088
Length: 76, Idn/Pos/Gap = 30/43/1 (39%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+PF   ++++ E F  YG+V  + IP DR+  R RGFAFV +        AI  L
Sbjct:   3 IFVGNLPFSATEQEIAEAFAEYGEVKSVKIPTDRESGRPRGFAFVDMD-EAAEAKAIEEL  61

Query: 131 DGSTMRERIIAVKRAE 146
           DG+T   R + V +AE
Sbjct:  62 DGATWNNRELRVNKAE  77

ref|NP_701984.1| hypothetical protein PF14_0096 [Plasmodium falciparum 3D7]
gb|AAN36708.1| hypothetical protein [Plasmodium falciparum 3D7]
(514 aa)

Score: 48 bits (113), Expect: 0.000123088
Length: 97, Idn/Pos/Gap = 33/50/4 (34%/51%/4%)

Query:  38 LIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRPYGDV  95
           + GET  Q   K + S  F N  + +E+   VG  + + +IP    Q DLL  F P+G++
Sbjct: 374 ITGETQWQKPRKIEQS--FINPINMNEITGPVGANIFIFHIPNEWIQTDLLSAFSPFGNI 431

Query:  96 IDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           I   I  +R   R RGFAFV    ++ A  A+  ++G
Sbjct: 432 ISAHIATERDTGRNRGFAFVSYDNVDSAINAVKYMNG 468

gb|AAL32533.1| ubiquitin / ribosomal protein CEP52 [Arabidopsis thaliana]
(329 aa)

Score: 48 bits (113), Expect: 0.000126207
Length: 80, Idn/Pos/Gap = 26/44/0 (32%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+     +L ++F   G V+D+ I +D+   R RGF FV + ++E+A+ A+   
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKGAMQMF 177

Query: 131 DGSTMRERIIAVKRAEYERG 150
           + S +  R + V   E  RG
Sbjct: 178 NSSQIGGRTVKVNFPEVPRG 197

gb|AAT41827.1| At4g13860 [Arabidopsis thaliana]
ref|NP_193122.2| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
(87 aa)

Score: 48 bits (113), Expect: 0.000127265
Length: 71, Idn/Pos/Gap = 27/40/0 (38%/56%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+   T  + L E F  YG+V+D  +  DR   R RGF FV   +  +AEAA++ +DG
Sbjct:   7 VGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG  66

Query: 133 STMRERIIAVK 143
             +  R ++VK
Sbjct:  67 KELNGRRVSVK  77

ref|XP_423739.1| PREDICTED: similar to peptidylprolyl isomerase E [Gallus gallus]
(164 aa)

Score: 48 bits (113), Expect: 0.000131584
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

gb|AAT68153.1| eukaryotic translation initiation factor 3 subunit 4 [Danio rerio]
(293 aa)

Score: 48 bits (113), Expect: 0.000134919
Length: 90, Idn/Pos/Gap = 30/49/4 (33%/54%/4%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           PNR ++    ++  + V N+   TR+ DL ELFRP+G +  I++  D+   + +GFAF+ 
Sbjct: 204 PNRRAD----DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFAFIS 259

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
               E A  AIA + G      I+ V+ A+
Sbjct: 260 FHRREDAARAIAGVSGFGYDHLILNVEWAK 289

gb|AAX07503.1| unknown [Gemmata sp. Wa1-1]
(122 aa)

Score: 48 bits (113), Expect: 0.000139498
Length: 75, Idn/Pos/Gap = 26/40/0 (34%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ +G     L ++F PYG V+   +  DR   R +GF FV + T ++A+AAI  +
Sbjct:  42 LYVGNLSWGVTDSQLQDMFTPYGSVVSAQVIMDRDTGRSKGFGFVEMGTDQEAQAAITGM 101

Query: 131 DGSTMRERIIAVKRA 145
            G  +  R + V  A
Sbjct: 102 HGQVIEGRPLTVNEA 116

ref|XP_216524.3| PREDICTED: similar to peptidylprolyl isomerase E [Rattus norvegicus]
(301 aa)

Score: 48 bits (113), Expect: 0.000144233
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|NP_062362.1| peptidylprolyl isomerase E [Mus musculus]
gb|AAH45154.1| Peptidylprolyl isomerase E [Mus musculus]
sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
dbj|BAB25512.1| unnamed protein product [Mus musculus]
(301 aa)

Score: 48 bits (113), Expect: 0.000145441
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

pir||S46286 RNA-binding protein - wood tobacco
dbj|BAA05170.1| RNA-binding glycine rich protein (RGP-2) [Nicotiana sylvestris]
(259 aa)

Score: 48 bits (113), Expect: 0.00014666
Length: 79, Idn/Pos/Gap = 30/43/0 (37%/54%/0%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           +S  L V  + +GT +  L E F  +G+VI+  +  DR   R RGF FV   + E+A +A
Sbjct:  38 SSSKLFVGGLSWGTDETSLKEAFSQHGEVIEARVIMDRDTGRSRGFGFVSFTSTEEAASA  97

Query: 127 IAALDGSTMRERIIAVKRA 145
           + ALDG  +  R I V  A
Sbjct:  98 LTALDGQDLHGRQIRVNYA 116

ref|NP_193696.2| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
(783 aa)

Score: 47 bits (112), Expect: 0.000151637
Length: 77, Idn/Pos/Gap = 23/46/0 (29%/59%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRN+P+   +E+L+E F  +G + ++ +  D++ +R RG A++     E A  A+  L
Sbjct: 263 LFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEEL 322

Query: 131 DGSTMRERIIAVKRAEY 147
           D S+ + R++ +  A++
Sbjct: 323 DNSSFQGRLLHILPAKH 339

gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_571982.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
(182 aa)

Score: 47 bits (112), Expect: 0.000151637
Length: 73, Idn/Pos/Gap = 27/42/0 (36%/57%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ + +  + LL++F  YG V D  +  DR+  R RGF FV   + ++AEAAIAA++ 
Sbjct:   8 VGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIAAMNE  67

Query: 133 STMRERIIAVKRA 145
             +  R + V  A
Sbjct:  68 QELDGRRVRVNMA  80

ref|XP_216364.3| PREDICTED: similar to 35 kDa SR repressor protein (SRrp35) [Rattus norvegicus]
(261 aa)

Score: 47 bits (112), Expect: 0.000152908
Length: 82, Idn/Pos/Gap = 31/48/0 (37%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D++IP D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYSRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             L+   +  R I ++ A+ +R
Sbjct:  69 YNLNRKWVCGRQIEIQFAQGDR  90

ref|XP_467618.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)]
dbj|BAD16369.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)]
dbj|BAD15930.1| RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)]
(399 aa)

Score: 47 bits (112), Expect: 0.000154189
Length: 106, Idn/Pos/Gap = 30/54/3 (28%/50%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L   F P+G+++++ I  D+  +R +G+AF+   T E   AA+ A+
Sbjct: 297 LFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKAM 356

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDG 176
           +G  +   +I V  A++   +    Q   ++ GR  Q  R R   G
Sbjct: 357 NGQIINGWMIVVDVAKHRSRD---RQPPYSASGRSNQVLRSRYHTG 399

ref|YP_100003.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
emb|CAH08430.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
ref|YP_212351.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
dbj|BAD49469.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
(122 aa)

Score: 47 bits (112), Expect: 0.000155481
Length: 85, Idn/Pos/Gap = 31/45/1 (36%/52%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + +  I +     DL ELF  +G+VI   I  DR+  R +GF FV +   E+  AAIA
Sbjct:   1 MNIFIAGISYNLSNADLGELFEEFGEVISAKIVMDRETGRSKGFGFVEMPNDEEGNAAIA  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
           AL+   +  + +AV  A   R EGP
Sbjct:  61 ALNEKEIDGKTLAVSVAR-PREEGP  84

ref|NP_524396.1| CG12357-PA [Drosophila melanogaster]
emb|CAB53185.1| cap binding protein 20 [Drosophila melanogaster]
gb|AAF55496.1| CG12357-PA [Drosophila melanogaster]
gb|AAL48049.1| RE12122p [Drosophila melanogaster]
(154 aa)

Score: 47 bits (112), Expect: 0.000155481
Length: 119, Idn/Pos/Gap = 38/60/5 (31%/50%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L++S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV      
Sbjct:  23 ERSLRDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRS  82

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +AEAA+  ++G+ + +R+I   R +++ G     Q+     G  GQ R   R+D  + R
Sbjct:  83 EAEAAMRFVNGTRLDDRLI---RVDWDAGFVEGRQYGRGKTG--GQVRDEYRTDYDAGR 136

gb|AAM01112.1| Putative RNA-binding protein [Oryza sativa]
(119 aa)

Score: 47 bits (112), Expect: 0.000156783
Length: 68, Idn/Pos/Gap = 27/38/0 (39%/55%/0%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           +S  L +  I +GT  + L E F  YG+VI+  +  DR   R RGF FV   + ++A AA
Sbjct:  29 SSSKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAA  88

Query: 127 IAALDGST 134
           I  +DG T
Sbjct:  89 ITGMDGKT  96

dbj|BAA06523.1| cp33 [Arabidopsis thaliana]
(321 aa)

Score: 47 bits (112), Expect: 0.000160757
Length: 80, Idn/Pos/Gap = 26/44/0 (32%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+     +L ++F   G V+D+ I +D+   R RGF FV + ++E+A+ A+   
Sbjct: 110 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 169

Query: 131 DGSTMRERIIAVKRAEYERG 150
           + S +  R + V   E  RG
Sbjct: 170 NSSQIGGRTVKVNFPEVPRG 189

gb|AAV59340.1| unknown protein [Oryza sativa (japonica cultivar-group)]
ref|XP_476203.1| unknown protein [Oryza sativa (japonica cultivar-group)]
(102 aa)

Score: 47 bits (112), Expect: 0.000160757
Length: 74, Idn/Pos/Gap = 26/40/1 (35%/54%/1%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+P+   ++ L++ F  YG  I   I WD ++ R RGF FV  +  E   AAI  ++G
Sbjct:  22 VGNLPYSVDEQTLMDYFADYG-AISAEIAWDSEMGRPRGFGFVNFEDNESVNAAIHGMNG  80

Query: 133 STMRERIIAVKRAE 146
             +  R + V RA+
Sbjct:  81 QDIGGRKVTVARAQ  94

gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var. neoformans B-3501A]
gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_571981.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
(161 aa)

Score: 47 bits (112), Expect: 0.000160757
Length: 73, Idn/Pos/Gap = 27/42/0 (36%/57%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ + +  + LL++F  YG V D  +  DR+  R RGF FV   + ++AEAAIAA++ 
Sbjct:   8 VGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIAAMNE  67

Query: 133 STMRERIIAVKRA 145
             +  R + V  A
Sbjct:  68 QELDGRRVRVNMA  80

gb|AAL89667.1| cyclophilin [Takifugu rubripes]
(300 aa)

Score: 47 bits (112), Expect: 0.000163462
Length: 61, Idn/Pos/Gap = 26/36/0 (42%/59%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+IDI IP D +  + RGFAF+  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDLIDIQIPLDYETEKHRGFAFIEFELAEDAAAAIDNMNESELFGRTIRVNIAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

emb|CAB43448.1| RNA-binding protein cp33 precursor [Arabidopsis thaliana]
gb|AAM62511.1| RNA-binding protein cp33 [Arabidopsis thaliana]
dbj|BAA06522.1| cp33 [Arabidopsis thaliana]
gb|AAL77723.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
gb|AAK62662.1| AT3g52380/F22O6_240 [Arabidopsis thaliana]
ref|NP_190806.1| 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative [Arabidopsis thaliana]
pir||S53494 RNA-binding protein cp33 precursor - Arabidopsis thaliana
(329 aa)

Score: 47 bits (112), Expect: 0.000163462
Length: 80, Idn/Pos/Gap = 26/44/0 (32%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+     +L ++F   G V+D+ I +D+   R RGF FV + ++E+A+ A+   
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 131 DGSTMRERIIAVKRAEYERG 150
           + S +  R + V   E  RG
Sbjct: 178 NSSQIGGRTVKVNFPEVPRG 197

ref|XP_583178.1| PREDICTED: similar to paraspeckle protein 1 [Bos taurus]
(222 aa)

Score: 47 bits (112), Expect: 0.000170426
Length: 89, Idn/Pos/Gap = 29/46/6 (32%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    ++D   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  69 KPGEKTYTQRCRLFVGNLPTDITEDDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 122

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 123 SRTLAEIAKAELDGTILKSRPLRIRFATH 151

gb|AAC00006.1| cyclophilin-33A [Homo sapiens]
(301 aa)

Score: 47 bits (112), Expect: 0.000171854
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

gb|EAA66520.1| hypothetical protein AN0421.2 [Aspergillus nidulans FGSC A4]
ref|XP_404558.1| hypothetical protein AN0421.2 [Aspergillus nidulans FGSC A4]
(819 aa)

Score: 47 bits (112), Expect: 0.000177687
Length: 134, Idn/Pos/Gap = 34/62/18 (25%/46%/13%)

Query:  32 SPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQN----------------SVGLMVRN  75
           SP+ AT           KP++  P   +P+ES+L                  S  L VRN
Sbjct: 244 SPAAATNPTPIINSNVEKPEAESP--EKPAESDLTKAPTAAEVDTNIENIRISARLFVRN 301

Query:  76 IPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTM 135
           + + T++ +L  +F P+G + +I + +D +    +GFA+V+    + A  A   LDG   
Sbjct: 302 LSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNLDGKIF 361

Query: 136 RERIIAVKRAEYER 149
           + R++ +  A  ++
Sbjct: 362 QGRLLHILPASQKK 375

emb|CAI19350.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
emb|CAI19579.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
gb|AAH08451.1| Peptidylprolyl isomerase E, isoform 1 [Homo sapiens]
gb|AAH04898.1| Peptidylprolyl isomerase E, isoform 1 [Homo sapiens]
gb|AAD19906.1| peptidyl-prolyl cis-trans isomerase E [Homo sapiens]
sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
ref|NP_006103.1| peptidylprolyl isomerase E isoform 1 [Homo sapiens]
(301 aa)

Score: 47 bits (112), Expect: 0.000179175
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|YP_010476.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
gb|AAS95735.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
(90 aa)

Score: 47 bits (112), Expect: 0.00018219
Length: 86, Idn/Pos/Gap = 30/45/1 (34%/52%/1%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L V N+PF   QED+ +LF  +G+V+ + + +DR+  R RGF FV +   +    A+
Sbjct:   2 SKTLYVGNLPFTAEQEDVRDLFAAHGEVVSVKLMFDRETGRPRGFGFVEMADADM-RTAM  60

Query: 128 AALDGSTMRERIIAVKRAEYERGEGP 153
            ALDG     R + V  A+      P
Sbjct:  61 EALDGYDFMGRNLRVNEAQERAPRAP  86

ref|XP_479791.1| putative RNA-binding protein RNP-D precursor [Oryza sativa (japonica cultivar-group)]
dbj|BAD33097.1| putative RNA-binding protein RNP-D precursor [Oryza sativa (japonica cultivar-group)]
(319 aa)

Score: 47 bits (112), Expect: 0.000188374
Length: 73, Idn/Pos/Gap = 29/42/0 (39%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P     +DL ELF+PYG V+ + I  D +    RG  FV +++L +A  A+ AL
Sbjct: 136 LFVCNLPRRCDVDDLYELFKPYGTVLSVEISRDPETGLSRGCGFVTMRSLPEARTAMNAL 195

Query: 131 DGSTMRERIIAVK 143
           DG  +  R + VK
Sbjct: 196 DGFDLDGREMLVK 208

gb|EAL43716.1| enhancer binding protein 2 [Entamoeba histolytica HM-1:IMSS]
(229 aa)

Score: 47 bits (112), Expect: 0.000189952
Length: 90, Idn/Pos/Gap = 27/54/4 (30%/60%/4%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWD-RQLRRIRGFAFVRLQTLEQAEAAIAA 129
           + V+N+ +  + EDL E+F+ +  V    + ++ R   R +G+ FV +++ E  +AA+  
Sbjct: 139 IFVKNLAYAIKDEDLKEIFKEFNVVSAKVVTYNHRGNVRSKGYGFVEVKSAEDQKAAVEK 198

Query: 130 LDGSTMRERIIAVKRA---EYERGEGPVSQ 156
           L+G+T +ER I V +A   + ++ E PV++
Sbjct: 199 LNGTTQKERAIGVFKAYKKQEQKEETPVTK 228

emb|CAI41004.1| paraspeckle component 1 [Homo sapiens]
gb|AAL59601.1| paraspeckle protein 1 alpha isoform [Homo sapiens]
(523 aa)

Score: 47 bits (111), Expect: 0.000193148
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  72 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 125

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 126 SRTLAEIAKAELDGTILKSRPLRIRFATH 154

emb|CAA46234.1| RNA binding protein 30 [Nicotiana plumbaginifolia]
sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)
(279 aa)

Score: 47 bits (111), Expect: 0.000193148
Length: 74, Idn/Pos/Gap = 29/39/0 (39%/52%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ +G  Q+ L  LF   G V+D  + +DR   R RGF FV   + E+   AI +LDG
Sbjct: 198 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 257

Query: 133 STMRERIIAVKRAE 146
             +  R I V  AE
Sbjct: 258 VDLNGRAIRVSPAE 271

gb|AAA27362.1| RNA-binding protein
(100 aa)

Score: 47 bits (111), Expect: 0.000194767
Length: 86, Idn/Pos/Gap = 28/48/0 (32%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ F   +ED+ E+F  YG V  + +P DR+  R+R FAF+ ++     +AAI+ L
Sbjct:   3 IYVGNLSFRATEEDVREVFAEYGPVSRVSLPVDRETGRLRAFAFIEMEEDAHEDAAISEL  62

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQ 156
           DG+    R + V +A  +    P ++
Sbjct:  63 DGAEWFGRQLRVSKARPKDDRRPAAR  88

ref|XP_392940.1| similar to ENSANGP00000015053 [Apis mellifera]
(313 aa)

Score: 47 bits (111), Expect: 0.000199703
Length: 74, Idn/Pos/Gap = 25/43/0 (33%/58%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+G+++D+ IP D +  + RGFAF+  ++ E A AAI  ++ S +  R I V  A+ +
Sbjct:  27 FIPFGEIVDVQIPLDYESEKHRGFAFIEFESAEDAAAAIDNMNDSELFGRTIRVNIAKPQ  86

Query: 149 RGEGPVSQHAGASD 162
           + +   S+   A D
Sbjct:  87 KIKEGSSKPVWADD 100

gb|AAH25281.1| RBM9 protein [Homo sapiens]
gb|AAL71905.1| hexaribonucleotide binding protein 2 [Homo sapiens]
(380 aa)

Score: 47 bits (111), Expect: 0.000203064
Length: 125, Idn/Pos/Gap = 37/60/3 (29%/48%/2%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFGT  80
           G + +H  + S S +T  G  T +G A+    +        SE +++   L V NIPF  
Sbjct:  63 GSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRF 122

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I
Sbjct: 123 RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 141 AVKRA 145
            V  A
Sbjct: 181 EVNNA 185

emb|CAH92437.1| hypothetical protein [Pongo pygmaeus]
(301 aa)

Score: 47 bits (111), Expect: 0.000204765
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

emb|CAI19348.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
emb|CAI19410.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
emb|CAI19577.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
gb|AAD19907.1| peptidyl-prolyl cis-trans isomerase E [Homo sapiens]
gb|AAC00007.1| cyclophilin-33B [Homo sapiens]
ref|NP_982281.1| peptidylprolyl isomerase E isoform 2 [Homo sapiens]
(296 aa)

Score: 47 bits (111), Expect: 0.000208211
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|XP_538402.1| PREDICTED: similar to RBM9 [Canis familiaris]
(1079 aa)

Score: 47 bits (111), Expect: 0.000208211
Length: 125, Idn/Pos/Gap = 37/60/3 (29%/48%/2%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFGT  80
           G + +H  + S S +T  G  T +G A+    +        SE +++   L V NIPF  
Sbjct:  58 GSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRF 117

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I
Sbjct: 118 RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 175

Query: 141 AVKRA 145
            V  A
Sbjct: 176 EVNNA 180

emb|CAH94523.1| mRNA processing protein, putative [Plasmodium berghei]
(153 aa)

Score: 47 bits (111), Expect: 0.000211715
Length: 86, Idn/Pos/Gap = 26/45/0 (30%/52%/0%)

Query:  66 QNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEA 125
           +N+  L + NIPF   +++L E+    G+V+++ I +D      +GFAF   + LE    
Sbjct:   4 KNNCSLWIGNIPFDLSEKELQEILSKVGEVVNVRIKYDIDKNVSKGFAFCEYKDLETCML  63

Query: 126 AIAALDGSTMRERIIAVKRAEYERGE 151
           A+  L+G  +R R + +  A  E  E
Sbjct:  64 ALKYLNGYEIRGRKLKLYWATDESKE  89

gb|AAO76994.1| putative RNA-binding protein rbpA [Bacteroides thetaiotaomicron VPI-5482]
ref|NP_810800.1| putative RNA-binding protein rbpA [Bacteroides thetaiotaomicron VPI-5482]
(100 aa)

Score: 47 bits (111), Expect: 0.000215277
Length: 85, Idn/Pos/Gap = 28/45/1 (32%/52%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + +  + +GT   DL  LF  YG+V    + +DR+  R RGFAFV +    + + AI 
Sbjct:   1 MNIYISGLSYGTNDADLTNLFAEYGEVSSAKVIFDRETGRSRGFAFVEMTNDAEGQKAID  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
            L+G    +++I+V  A   R E P
Sbjct:  61 ELNGVEYDQKVISVSVAR-PRAEKP  84

emb|CAG30445.1| RBM9 [Homo sapiens]
(376 aa)

Score: 47 bits (111), Expect: 0.0002189
Length: 125, Idn/Pos/Gap = 37/60/3 (29%/48%/2%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFGT  80
           G + +H  + S S +T  G  T +G A+    +        SE +++   L V NIPF  
Sbjct:  63 GSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRF 122

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I
Sbjct: 123 RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 180

Query: 141 AVKRA 145
            V  A
Sbjct: 181 EVNNA 185

ref|XP_397316.1| similar to CG12357-PA [Apis mellifera]
(166 aa)

Score: 47 bits (111), Expect: 0.000222583
Length: 116, Idn/Pos/Gap = 38/56/5 (32%/48%/4%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           L+NS  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV       AE
Sbjct:  35 LRNSTTLYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDKYKKTPCGFCFVEYYQRVDAE  94

Query: 125 AAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
             +  ++G+ + +RII   R +++ G     Q+     G  GQ R   RSD  S R
Sbjct:  95 NCMRYINGTRLDDRII---RTDWDAGFIEGRQYGRGKTG--GQVRDEYRSDFDSGR 145

gb|AAH21715.1| Serine-arginine repressor protein (35 kDa) [Homo sapiens]
ref|NP_542781.2| serine-arginine repressor protein (35 kDa) [Homo sapiens]
(261 aa)

Score: 47 bits (111), Expect: 0.000222583
Length: 82, Idn/Pos/Gap = 30/48/0 (36%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L +RN+   TR EDL   F  YG ++D++IP D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRGAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             L+   +  R I ++ A+ +R
Sbjct:  69 YNLNRKWVCGRQIEIQFAQGDR  90

emb|CAG31855.1| hypothetical protein [Gallus gallus]
(523 aa)

Score: 47 bits (111), Expect: 0.000224448
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  71 KPGEKSYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 124

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 125 SRTLAEIAKAELDGTILKSRPLRIRFATH 153

ref|NP_704707.1| RNA-binding protein, putative [Plasmodium falciparum 3D7]
emb|CAD51850.1| RNA-binding protein, putative [Plasmodium falciparum 3D7]
(388 aa)

Score: 47 bits (111), Expect: 0.000226329
Length: 74, Idn/Pos/Gap = 25/43/4 (33%/58%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAA- 129
           LMVRNIPF TR E  L+ F  +G++ D  I  +++ R  +G+ FV  + +E  +  + + 
Sbjct: 143 LMVRNIPFSTRDEQFLKYFESFGEIEDGIIVREKEGRS-KGYGFVTFKYVESVQKCLKSS 201

Query: 130 --LDGSTMRERIIA 141
             LD   ++ R++A
Sbjct: 202 HTLDNKELQVRLVA 215

gb|AAL57515.1| SRrp35 [Homo sapiens]
sp|Q8WXF0|SRR35_HUMAN 35 kDa SR repressor protein (SRrp35)
(261 aa)

Score: 47 bits (111), Expect: 0.000230138
Length: 82, Idn/Pos/Gap = 30/48/0 (36%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L +RN+   TR EDL   F  YG ++D++IP D   RR RGFA+V+ + +  AE A+
Sbjct:   9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             L+   +  R I ++ A+ +R
Sbjct:  69 YNLNRKWVCGRQIEIQFAQGDR  90

ref|XP_483744.1| nucleic acid-binding protein-like [Oryza sativa (japonica cultivar-group)]
dbj|BAD09079.1| nucleic acid-binding protein-like [Oryza sativa (japonica cultivar-group)]
(131 aa)

Score: 47 bits (111), Expect: 0.000232066
Length: 73, Idn/Pos/Gap = 27/44/0 (36%/60%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+P+      LL+LF  +G+V++  + +DR+  R RGF FV + + E+ + AI+ALDG
Sbjct:  51 VGNLPWQVDDSRLLQLFSEHGEVVNASVVYDRESGRSRGFGFVSMASKEELDDAISALDG 110

Query: 133 STMRERIIAVKRA 145
             +  R + V  A
Sbjct: 111 QELDGRPLRVNVA 123

emb|CAA59259.1| CAP binding protein [Xenopus laevis]
sp|P52299|NCBP2_XENLA Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20)
prf||2118330B cap-binding protein
(148 aa)

Score: 47 bits (111), Expect: 0.00023401
Length: 119, Idn/Pos/Gap = 38/57/5 (31%/47%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           ES L+ S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV   T  
Sbjct:  25 ESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRA  84

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
            A  A+  ++G+ + +RI+   R +++ G     Q+     G  GQ R   R D  + R
Sbjct:  85 DAGTAMRFINGTRLDDRIV---RTDWDAGFKEGRQYGRGKSG--GQVRDEYRQDYDAGR 138

gb|AAL67150.1| RNA binding motif protein 9 [Homo sapiens]
sp|O43251|RBM9_HUMAN RNA-binding protein 9 (RNA binding motif protein 9) (Hexaribonucleotide binding protein 2) (Repressor of tamoxifen transcriptional activity)
(390 aa)

Score: 47 bits (111), Expect: 0.000237948
Length: 125, Idn/Pos/Gap = 37/60/3 (29%/48%/2%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFGT  80
           G + +H  + S S +T  G  T +G A+    +        SE +++   L V NIPF  
Sbjct:  73 GSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRF 132

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I
Sbjct: 133 RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 190

Query: 141 AVKRA 145
            V  A
Sbjct: 191 EVNNA 195

emb|CAA43427.1| 29kD A ribonucleoprotein [Nicotiana sylvestris]
sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)
(273 aa)

Score: 47 bits (111), Expect: 0.000239942
Length: 74, Idn/Pos/Gap = 29/39/0 (39%/52%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ +G  Q+ L  LF   G V+D  + +DR   R RGF FV   + E+   AI +LDG
Sbjct: 192 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251

Query: 133 STMRERIIAVKRAE 146
             +  R I V  AE
Sbjct: 252 VDLNGRAIRVSPAE 265

gb|AAH26772.1| Paraspeckle protein 1 [Mus musculus]
dbj|BAB27509.2| unnamed protein product [Mus musculus]
(523 aa)

Score: 47 bits (111), Expect: 0.000241952
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  71 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 124

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 125 SRTLAEIAKAELDGTILKSRPLRIRFATH 153

pir||T15047 RNA binding protein 3 - wood tobacco
dbj|BAA22083.1| RNA binding protein [Nicotiana sylvestris]
(144 aa)

Score: 47 bits (111), Expect: 0.000246024
Length: 79, Idn/Pos/Gap = 30/41/0 (37%/51%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L V  + +GT  + L + F  +GDV+D  +  DR   R RGF FV     E A  AI
Sbjct:  37 STKLFVGGLSWGTDDQSLRDAFATFGDVVDARVIVDRDSGRSRGFGFVNFSDDECANEAI  96

Query: 128 AALDGSTMRERIIAVKRAE 146
            A+DG  ++ R I V  A+
Sbjct:  97 KAMDGQELQGRNIRVSIAQ 115

ref|NP_001006430.1| hypothetical protein LOC422214 [Gallus gallus]
emb|CAG31678.1| hypothetical protein [Gallus gallus]
(168 aa)

Score: 47 bits (111), Expect: 0.000250164
Length: 114, Idn/Pos/Gap = 37/56/5 (32%/49%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L+ S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV   T  
Sbjct:  36 EKFLKISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRA  95

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSD 175
            AE A+  ++G+ + +RI+   R +++ G     Q+     G  GQ R   R+D
Sbjct:  96 DAEHAMRFINGTRLDDRIV---RTDWDAGFKEGRQYGRGKTG--GQVRDEYRTD 144

ref|XP_213535.3| PREDICTED: similar to ataxin 2-binding protein 1 isoform 2 [Rattus norvegicus]
(328 aa)

Score: 47 bits (111), Expect: 0.000250164
Length: 99, Idn/Pos/Gap = 34/52/4 (34%/52%/4%)

Query:  47 AAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           AA+  S +  P+ P+E   Q    L V NIPF  R  DL ++F  +G ++D+ I ++   
Sbjct:  79 AAQTDSQQLHPSDPTEK--QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-- 134

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           R  +GF FV  +T   A+ A   L+G+ +  R I V  A
Sbjct: 135 RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNA 173

emb|CAG01005.1| unnamed protein product [Tetraodon nigroviridis]
(1467 aa)

Score: 46 bits (110), Expect: 0.00025226
Length: 123, Idn/Pos/Gap = 36/58/8 (29%/47%/6%)

Query:  23 DSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPN--RPSESELQNSVGLMVRNIPFGT  80
           DS   T + SP          EQ +   + +    N  +  E        L+V N+P   
Sbjct:  37 DSSEPTPQQSPQAEDAEAAEEEQRSPAAEMTLDINNFRKAGEKTFTQRSRLLVGNLPLDM  96

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
            +E+   +F  YG++ ++FI       R RGF F++L+T   AE A A LDG+ ++ER I
Sbjct:  97 TEEEFKNMFAKYGNINEVFI------NRERGFGFIQLETRTLAEIAKAELDGTVLKERPI 150

Query: 141 AVK 143
            ++
Sbjct: 151 RIR 153

emb|CAH75094.1| RNA-binding protein, putative [Plasmodium chabaudi]
(321 aa)

Score: 46 bits (110), Expect: 0.00025226
Length: 74, Idn/Pos/Gap = 24/43/4 (32%/58%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAA- 129
           LMVRNIPF T+ E  L+ F  +G++ D  I  +++ R  +G+ FV  + +E  +  + + 
Sbjct: 104 LMVRNIPFSTKDEQFLKYFETFGEIEDGIIVREKEGRS-KGYGFVTFKYIESVQKCLKSN 162

Query: 130 --LDGSTMRERIIA 141
             LD   ++ R++A
Sbjct: 163 HTLDNKDLQVRLVA 176

gb|AAL83407.1| hexaribonucleotide binding protein 1 isoform beta [Homo sapiens]
gb|AAL83406.1| hexaribonucleotide binding protein 1 isoform beta [Homo sapiens]
ref|NP_665900.1| ataxin 2-binding protein 1 isoform 3 [Homo sapiens]
(395 aa)

Score: 46 bits (110), Expect: 0.000258654
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  93 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 151

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 152 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209

Query: 144 RA 145
            A
Sbjct: 210 NA 211

ref|XP_224234.3| PREDICTED: similar to Paraspeckle protein 1 [Rattus norvegicus]
(522 aa)

Score: 46 bits (110), Expect: 0.000258654
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  71 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 124

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 125 SRTLAEIAKAELDGTILKSRPLRIRFATH 153

ref|NP_079958.2| paraspeckle protein 1 [Mus musculus]
dbj|BAB30876.2| unnamed protein product [Mus musculus]
(523 aa)

Score: 46 bits (110), Expect: 0.000260821
Length: 89, Idn/Pos/Gap = 30/46/6 (33%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +ED   LF  YG+  ++FI       R RGF F+RL+
Sbjct:  71 KPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFI------NRDRGFGFIRLE 124

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRAEY 147
           +   AE A A LDG+ ++ R + ++ A +
Sbjct: 125 SRTLAEIAKAELDGTILKSRPLRIRFATH 153

gb|AAH57783.1| SRP46 protein [Homo sapiens]
(275 aa)

Score: 46 bits (110), Expect: 0.00026521
Length: 95, Idn/Pos/Gap = 32/51/0 (33%/53%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct:   9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHA 158
           + A AA+DG+ +  R + V+ A Y R + P S+  
Sbjct:  69 QDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQG 103

gb|AAK54350.1| SRp46 splicing factor [Homo sapiens]
ref|NP_115285.1| Splicing factor, arginine/serine-rich, 46kD [Homo sapiens]
(282 aa)

Score: 46 bits (110), Expect: 0.00026521
Length: 95, Idn/Pos/Gap = 32/51/0 (33%/53%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           ++   + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A
Sbjct:   9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDA  68

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHA 158
           + A AA+DG+ +  R + V+ A Y R + P S+  
Sbjct:  69 QDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQG 103

gb|AAV74340.1| ataxin-2 binding protein 1 variant 4 [Mus musculus]
(394 aa)

Score: 46 bits (110), Expect: 0.000267432
Length: 114, Idn/Pos/Gap = 37/55/5 (32%/48%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  DL ++F  
Sbjct: 100 SAQTVSGTATQTDDAAPTDGQP-QTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQ 158

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 159 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 210

dbj|BAD94565.1| eukaryotic translation initiation factor 3 subunit like protein [Arabidopsis thaliana]
(89 aa)

Score: 46 bits (110), Expect: 0.000267432
Length: 80, Idn/Pos/Gap = 30/45/2 (37%/56%/2%)

Query:  66 QNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEA 125
           +NSV   V N+   TR+ DL+ELF P+G V  +++  D++    RGF FV   + E A+ 
Sbjct:   7 ENSV--RVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQR  64

Query: 126 AIAALDGSTMRERIIAVKRA 145
           AI  L+G      I+ V+ A
Sbjct:  65 AINKLNGYGYDNLILRVEWA  84

ref|XP_220155.3| PREDICTED: similar to hexaribonucleotide binding protein 1 [Rattus norvegicus]
(416 aa)

Score: 46 bits (110), Expect: 0.000269673
Length: 114, Idn/Pos/Gap = 37/55/5 (32%/48%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  DL ++F  
Sbjct: 100 SAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQ 158

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 159 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 210

gb|EAA21186.1| ribonucleoprotein homolog F21B7.26 - Arabidopsis thaliana-related [Plasmodium yoelii yoelii]
(507 aa)

Score: 46 bits (110), Expect: 0.00027421
Length: 87, Idn/Pos/Gap = 29/47/3 (33%/54%/3%)

Query:  49 KP-KSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQ 105
           KP K  + F N  + +E+   VG  + + +IP    Q DLL  F P+G++I  +I  ++ 
Sbjct: 375 KPRKMDQDFINPLNMNEVSGPVGANIFIFHIPNEWIQNDLLAAFSPFGNIISAYIATEKD 434

Query: 106 LRRIRGFAFVRLQTLEQAEAAIAALDG 132
             R RGFAFV    ++ A  A+  ++G
Sbjct: 435 TGRNRGFAFVSYDNVDSAINAVKYMNG 461

gb|AAS53478.1| AFR107Wp [Ashbya gossypii ATCC 10895]
ref|NP_985654.1| AFR107Wp [Eremothecium gossypii]
(396 aa)

Score: 46 bits (110), Expect: 0.000278825
Length: 101, Idn/Pos/Gap = 29/56/2 (28%/55%/1%)

Query:  42 TTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIP 101
           +T + A+ P+  R    +  ++  Q S  L + N+ F   ++ L ELF  +G+VI + IP
Sbjct: 243 STSKPASAPREDRA--KKYGDTPSQPSDTLFLGNLSFNADRDALFELFSKHGNVISVRIP 300

Query: 102 WDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
              +  + +GF +V+  ++E+A+AA+ AL G  +  R + +
Sbjct: 301 THPESNQPKGFGYVQYGSVEEAQAALDALQGEYIDNRPVRI 341

emb|CAG31295.1| hypothetical protein [Gallus gallus]
(190 aa)

Score: 46 bits (110), Expect: 0.000288288
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

emb|CAH98134.1| RNA-binding protein, putative [Plasmodium berghei]
(348 aa)

Score: 46 bits (110), Expect: 0.000290703
Length: 74, Idn/Pos/Gap = 24/42/4 (32%/56%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAA- 129
           LMVRNIPF T+ E  L+ F  +G++ D  I  +++ R  +G+ FV  + +E  +  +   
Sbjct: 103 LMVRNIPFSTKDEQFLKYFETFGEIEDGIIVREKEGRS-KGYGFVTFKYIESVQKCLKGS 161

Query: 130 --LDGSTMRERIIA 141
             LD   ++ R++A
Sbjct: 162 HTLDNKDLQVRLVA 175

dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
(164 aa)

Score: 46 bits (110), Expect: 0.000293139
Length: 75, Idn/Pos/Gap = 26/43/0 (34%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L  +F  YG + ++ +  DR+ +R RGF FV  +  E A+ A+A +
Sbjct:   8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G T+  R I V +A
Sbjct:  68 NGKTVDGRQIRVDQA  82

ref|XP_290734.5| PREDICTED: similar to ataxin 2-binding protein 1 isoform 4; hexaribonucleotide binding protein 1 [Homo sapiens]
(312 aa)

Score: 46 bits (110), Expect: 0.000298072
Length: 120, Idn/Pos/Gap = 38/59/6 (31%/49%/5%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDL  85
           S  +    +G   + +T E  AA+  S    P+ P+E   Q    L V NIPF  R  DL
Sbjct:  60 SEASTQPIAGTQTVPQTDE--AAQTDSQPLHPSDPTEK--QQPKRLHVSNIPFRFRDPDL 115

Query:  86 LELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            ++F  +G ++D+ I ++   R  +GF FV  +T   A+ A   L+G+ +  R I V  A
Sbjct: 116 RQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNA 173

gb|AAA84417.1| no-on transient A-like protein
(642 aa)

Score: 46 bits (110), Expect: 0.000308188
Length: 96, Idn/Pos/Gap = 32/50/6 (33%/52%/6%)

Query:  50 PKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRI 109
           P    P    P++++      L V N+   T  +DL E+F+PYG++ DIF   ++     
Sbjct: 258 PTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKN---- 313

Query: 110 RGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
             F F+RL   + AE A  ALDGS  + R++ V+ A
Sbjct: 314 --FTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFA 347

pdb|1U6F|A Chain A, Nmr Solution Structure Of Tcubp1, A Single Rbd-Unit From Trypanosoma Cruzi
(139 aa)

Score: 46 bits (110), Expect: 0.000308188
Length: 91, Idn/Pos/Gap = 31/46/3 (34%/50%/3%)

Query:  55 PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAF 114
           P    P    L+N   LMV  IP    +  L +LF  YG +  + I  DR+ R+ RG+ F
Sbjct:  32 PTQMNPEPDVLRN---LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGF  88

Query: 115 VRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           V+ Q+   A+ AIA L+G  +  + + V  A
Sbjct:  89 VKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119

emb|CAI19347.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
emb|CAI19409.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
emb|CAI19576.1| peptidylprolyl isomerase E (cyclophilin E) [Homo sapiens]
(314 aa)

Score: 46 bits (110), Expect: 0.000308188
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|XP_513346.1| PREDICTED: similar to peptidylprolyl isomerase E isoform 2; peptidyl-prolyl cis-trans isomerase E; cyclophilin 33; cyclophilin E; PPIase E; rotamase E [Pan troglodytes]
(314 aa)

Score: 46 bits (110), Expect: 0.000308188
Length: 61, Idn/Pos/Gap = 26/35/0 (42%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAFV  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

gb|AAL83409.1| hexaribonucleotide binding protein 1 isoform gamma [Homo sapiens]
gb|AAL71904.1| hexaribonucleotide binding protein 1 isoform gamma [Homo sapiens]
ref|NP_665898.1| ataxin 2-binding protein 1 isoform 1 [Homo sapiens]
(418 aa)

Score: 46 bits (110), Expect: 0.000324009
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  93 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 151

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 152 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209

Query: 144 RA 145
            A
Sbjct: 210 NA 211

gb|AAV74339.1| ataxin-2 binding protein 1 variant 3 [Mus musculus]
(417 aa)

Score: 46 bits (109), Expect: 0.000337812
Length: 114, Idn/Pos/Gap = 37/55/5 (32%/48%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  DL ++F  
Sbjct: 100 SAQTVSGTATQTDDAAPTDGQP-QTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQ 158

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 159 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 210

ref|YP_011643.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
gb|AAS96903.1| RNA-binding protein [Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough]
(88 aa)

Score: 46 bits (109), Expect: 0.000340642
Length: 72, Idn/Pos/Gap = 27/41/1 (37%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+P+   +E + +LF P+G V+ + +  DR   R RGF FV +   E A AAI AL
Sbjct:   5 IYVGNLPWSATEEQVQDLFSPFGPVLSVKLVSDRDTGRARGFGFVEMDDAE-AVAAIEAL  63

Query: 131 DGSTMRERIIAV 142
           D ++   R + V
Sbjct:  64 DNASFGGRTLRV  75

gb|AAW40816.1| hypothetical protein CNA02490 [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_566635.1| hypothetical protein CNA02490 [Cryptococcus neoformans var. neoformans JEC21]
(287 aa)

Score: 46 bits (109), Expect: 0.000346375
Length: 112, Idn/Pos/Gap = 37/55/3 (33%/49%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  +   TR+ DL + F  YGDV  + I +D++  R RGF F+ ++T++ A   I  L
Sbjct:  84 LGVFGLSIRTRERDLEDEFMRYGDVEKVVIVYDQRTDRSRGFGFITMRTVDDAARCIEKL 143

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRR 182
           +G ++  R I   R +Y   + P S   G   G +   R  R   GR   RR
Sbjct: 144 NGLSLHGRNI---RVDYSATQKPHSSTPGQYMGAKRPVRDDRYGRGRYDDRR 192

gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
pir||T06796 glycine-rich RNA-binding protein - garden pea
(146 aa)

Score: 46 bits (109), Expect: 0.000349277
Length: 107, Idn/Pos/Gap = 32/52/1 (29%/48%/0%)

Query:  39 IGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           +G    QGA +  S  P  +  +     +S  L +  + +G   + L + F  YG+V++ 
Sbjct:   7 LGNLLRQGATQ-SSHAPVSSMLNYLRHMSSSKLFIGGLSYGVDDQSLKDAFASYGEVVEA  65

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
            +  DR   R RGF FV   + E A +A++A+DG  +  R I V  A
Sbjct:  66 RVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVSYA 112

ref|ZP_00330029.1| COG0724: RNA-binding proteins (RRM domain) [Moorella thermoacetica ATCC 39073]
(82 aa)

Score: 46 bits (109), Expect: 0.000349277
Length: 75, Idn/Pos/Gap = 29/44/1 (38%/58%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+ T +E+L   F  +G+V+   I  DRQ  R RGF FV +   + A+  IAA+
Sbjct:   5 LYVGNLPWATSEEELARAFASHGEVLSARIITDRQTGRSRGFGFVEVNDAD-ADQMIAAM  63

Query: 131 DGSTMRERIIAVKRA 145
           +G+ +  RI+ V  A
Sbjct:  64 NGAELGGRILTVNEA  78

gb|EAA19292.1| UBP1 interacting protein 2a [Plasmodium yoelii yoelii]
(344 aa)

Score: 46 bits (109), Expect: 0.000352203
Length: 74, Idn/Pos/Gap = 24/42/4 (32%/56%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA-- 128
           LMVRNIPF T+ E  L+ F  +G++ D  I  +++ R  +G+ FV  + +E  +  +   
Sbjct:  99 LMVRNIPFSTKDEQFLKYFETFGEIEDGIIVREKEGRS-KGYGFVTFKYIESVQKCLKTT 157

Query: 129 -ALDGSTMRERIIA 141
             LD   ++ R++A
Sbjct: 158 HTLDNKDLQVRLVA 171

gb|AAK54351.1| SRp46 splicing factor [Homo sapiens]
(272 aa)

Score: 46 bits (109), Expect: 0.000355154
Length: 90, Idn/Pos/Gap = 32/49/0 (35%/54%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + L V N+ + T  + L  +F  YG V D++IP +   +  RGFAFVR      A+ A A
Sbjct:   4 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA  63

Query: 129 ALDGSTMRERIIAVKRAEYERGEGPVSQHA 158
           A+DG+ +  R + V+ A Y R + P S+  
Sbjct:  64 AMDGAELDGRELRVQVARYGRRDLPRSRQG  93

ref|NP_536740.1| CG10328-PA [Drosophila melanogaster]
gb|AAF55347.1| CG10328-PA [Drosophila melanogaster]
(630 aa)

Score: 46 bits (109), Expect: 0.000355154
Length: 96, Idn/Pos/Gap = 32/50/6 (33%/52%/6%)

Query:  50 PKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRI 109
           P    P    P++++      L V N+   T  +DL E+F+PYG++ DIF   ++     
Sbjct: 246 PTHELPPIELPTDNKFVGRNRLYVGNLTSDTTDDDLREMFKPYGEIGDIFSNPEKN---- 301

Query: 110 RGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
             F F+RL   + AE A  ALDGS  + R++ V+ A
Sbjct: 302 --FTFLRLDYYQNAEKAKRALDGSLRKGRVLRVRFA 335

gb|AAL83408.1| hexaribonucleotide binding protein 1 isoform alpha [Homo sapiens]
gb|AAL83405.1| hexaribonucleotide binding protein 1 isoform alpha [Homo sapiens]
ref|NP_665899.1| ataxin 2-binding protein 1 isoform 2 [Homo sapiens]
(392 aa)

Score: 46 bits (109), Expect: 0.00035813
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  93 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 151

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 152 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 209

Query: 144 RA 145
            A
Sbjct: 210 NA 211

ref|NP_899011.1| ataxin 2 binding protein 1 isoform alpha [Mus musculus]
gb|AAL83425.1| hexaribonucleotide binding protein 1 [Mus musculus]
(417 aa)

Score: 46 bits (109), Expect: 0.000361131
Length: 114, Idn/Pos/Gap = 37/55/5 (32%/48%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  DL ++F  
Sbjct: 100 SAQTVSGTATQTDDAAPTDGQP-QTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQ 158

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 159 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 210

gb|AAH66958.1| SFRS2 protein [Homo sapiens]
(179 aa)

Score: 46 bits (109), Expect: 0.000364156
Length: 70, Idn/Pos/Gap = 27/40/0 (38%/57%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           +++    L V N+ + T  + L  +F  YG V D++IP DR  +  RGFAFVR      A
Sbjct:   9 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA  68

Query: 124 EAAIAALDGS 133
           E A+ A+DG+
Sbjct:  69 EDAMDAMDGA  78

pir||S44024 RNA-binding protein - Anabaena sp
gb|AAA17426.1| RNA-binding protein
(103 aa)

Score: 46 bits (109), Expect: 0.000370284
Length: 78, Idn/Pos/Gap = 26/44/0 (33%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   ++ L  +F  YG V  + +P DR+  R+RGF FV + +  +  AAI 
Sbjct:   1 MSVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

ref|ZP_00158428.1| COG0724: RNA-binding proteins (RRM domain) [Anabaena variabilis ATCC 29413]
dbj|BAB73786.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
ref|NP_486127.1| RNA-binding protein RbpA2 [Nostoc sp. PCC 7120]
pir||AI2066 RNA-binding protein RbpA2 [imported] - Nostoc sp. (strain PCC 7120)
(103 aa)

Score: 46 bits (109), Expect: 0.000370284
Length: 78, Idn/Pos/Gap = 26/44/0 (33%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   ++ L  +F  YG V  + +P DR+  R+RGF FV + +  +  AAI 
Sbjct:   1 MSVYVGNLSYDVTEDSLNAVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

emb|CAE61482.1| Hypothetical protein CBG05376 [Caenorhabditis briggsae]
(182 aa)

Score: 46 bits (109), Expect: 0.000373387
Length: 90, Idn/Pos/Gap = 26/48/1 (28%/53%/1%)

Query:  53 SRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGF 112
           ++  P    E +  +S  + + N+ FG+  ED+ E F+  G++I   IP D+  ++ + F
Sbjct:  37 TKMIPPTAEEQKEIDSRSVFIGNVDFGSSIEDIEEHFKGCGEIIRTTIPKDKFTKKQKNF  96

Query: 113 AFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
           A++   + E  E A+  ++GS  R R I V
Sbjct:  97 AYIEFASAESIENAL-VMNGSLFRSRQIVV 125

gb|EAL29108.1| GA11577-PA [Drosophila pseudoobscura]
(154 aa)

Score: 46 bits (109), Expect: 0.00037967
Length: 119, Idn/Pos/Gap = 37/60/5 (31%/50%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L++S  L V N+ F T +E + ELF   GDV  I +  D+  +   GF FV      
Sbjct:  23 ERSLKDSCTLYVGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPCGFCFVEYYIRS  82

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
           +AE+A+  ++G+ + +R+I   R +++ G     Q+     G  GQ R   R+D  + R
Sbjct:  83 EAESAMRFVNGTRLDDRLI---RVDWDAGFIEGRQYGRGKTG--GQVRDEYRTDYDAGR 136

ref|XP_468181.1| putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
dbj|BAD19861.1| putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
(289 aa)

Score: 46 bits (109), Expect: 0.000382851
Length: 92, Idn/Pos/Gap = 32/48/3 (34%/52%/3%)

Query:  57 PNRPSESELQ---NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFA 113
           P +P ESE++   +   + V N+   TR+EDL ELF  +G +   ++  D +    RGF 
Sbjct: 193 PPKPRESEMRRRNDENSVRVTNLSEDTREEDLRELFGSFGPLTRAYVALDHRTGESRGFG 252

Query: 114 FVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           F+     E AE AIA L+G      I+ V+ A
Sbjct: 253 FLSFVYREDAERAIAKLNGYGYDSLILNVEWA 284

gb|AAF78291.1| ataxin 2-binding protein [Homo sapiens]
(377 aa)

Score: 46 bits (109), Expect: 0.000389293
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  53 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 111

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 112 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 169

Query: 144 RA 145
            A
Sbjct: 170 NA 171

dbj|BAB70875.1| unnamed protein product [Homo sapiens]
(450 aa)

Score: 46 bits (109), Expect: 0.000395844
Length: 125, Idn/Pos/Gap = 37/60/3 (29%/48%/2%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFGT  80
           G + +H  + S S +T  G  T +G A+    +        SE +++   L V NIPF  
Sbjct: 133 GSTQAHGEQSSNSPSTQNGSLTTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFRF 192

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERII 140
           R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I
Sbjct: 193 RDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 250

Query: 141 AVKRA 145
            V  A
Sbjct: 251 EVNNA 255

emb|CAH89770.1| hypothetical protein [Pongo pygmaeus]
(374 aa)

Score: 46 bits (109), Expect: 0.000395844
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

gb|AAP99059.1| RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
ref|NP_874407.1| RNA-binding protein, RRM domain [Prochlorococcus marinus subsp. marinus str. CCMP1375]
(252 aa)

Score: 46 bits (109), Expect: 0.000399161
Length: 78, Idn/Pos/Gap = 30/47/0 (38%/60%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+PF   QED+++LF PYG+V +  +P +R   R RGFAF+ +       AAI 
Sbjct:   1 MSIFVGNLPFRAEQEDVIQLFAPYGEVANCSLPLERDTGRKRGFAFIEMADEAAEAAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           AL G+ +  R + + +AE
Sbjct:  61 ALQGAELMGRPLRINKAE  78

gb|AAV74338.1| ataxin-2 binding protein 1 variant 2 [Mus musculus]
(373 aa)

Score: 46 bits (109), Expect: 0.000409279
Length: 114, Idn/Pos/Gap = 37/56/5 (32%/49%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPF--PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   P+  +ES+ Q    L V NIPF  R  DL ++F  
Sbjct:  80 SAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPK-RLHVSNIPFRFRDPDLRQMFGQ 138

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 139 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190

ref|XP_326072.1| hypothetical protein [Neurospora crassa]
gb|EAA33697.1| hypothetical protein [Neurospora crassa]
(772 aa)

Score: 46 bits (109), Expect: 0.000409279
Length: 84, Idn/Pos/Gap = 32/50/3 (38%/59%/3%)

Query:  63 SELQNSVGLMVRNIPFGTRQ-EDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           +E Q    L++RN+P+  ++ E L ELF+PYG V    +P D+   ++ GF FV L+  +
Sbjct: 150 AEAQKPNKLIIRNLPWSIKKPEQLAELFKPYGKVRFADLPNDKG--KLSGFGFVTLRGRK 207

Query: 122 QAEAAIAALDGSTMRERIIAVKRA 145
            AE AI A++G  +  R +AV  A
Sbjct: 208 NAEKAIEAVNGMEVDGRPLAVDWA 231

ref|NP_565646.2| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
(116 aa)

Score: 46 bits (109), Expect: 0.000416166
Length: 95, Idn/Pos/Gap = 27/49/2 (28%/51%/2%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L V+ I F + +E L + F  YG V+ + +  D+   R +GFA+V   + E+AE A+
Sbjct:  20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL  79

Query: 128 AALDGSTMRERIIAVKRAEYERGEGPVSQ--HAGA 160
             L+   +  R++ +   +  +   P ++  HAG 
Sbjct:  80 LELNAQLVDGRVVILDTTKAAKHNPPDTKPNHAGG 114

ref|NP_917982.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza sativa (japonica cultivar-group)]
dbj|BAC10140.1| putative 29 kDa ribonucleoprotein A, chloroplast precursor [Oryza sativa (japonica cultivar-group)]
(264 aa)

Score: 46 bits (109), Expect: 0.000423169
Length: 92, Idn/Pos/Gap = 33/44/0 (35%/47%/0%)

Query:  55 PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAF 114
           P   R   S   +S  L V N+ +G     L  LF   G V+D  + +DR+  R RGF F
Sbjct: 166 PRSPRGGGSNFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGF 225

Query: 115 VRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           V   + E+   AI+ LDG  +  R I V  AE
Sbjct: 226 VTYGSAEEVNNAISNLDGVDLDGRQIRVTVAE 257


Score: 45 bits (106), Expect: 0.000811256
Length: 72, Idn/Pos/Gap = 27/38/0 (37%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+PF      L  LF   G V  + + +DRQ  R RGF FV + T E+A AA+   
Sbjct:  82 VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRGFGFVTMSTAEEAGAAVEQF 141

Query: 131 DGSTMRERIIAV 142
           +G T + R + V
Sbjct: 142 NGYTFQGRPLRV 153

gb|EAL02808.1| hypothetical protein CaO19.9215 [Candida albicans SC5314]
(845 aa)

Score: 46 bits (109), Expect: 0.000426714
Length: 74, Idn/Pos/Gap = 25/45/1 (33%/60%/1%)

Query:  75 NIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGST 134
           N+PF   ++DLLELF  +G +  + +P  +  +  RGFAFV    +++AE A++ L+G  
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMSQLEGVH 781

Query: 135 MRERIIAVKRAEYE 148
           +  R + ++ AE +
Sbjct: 782 LLGRRLVMQYAEQD 795


Score: 44 bits (104), Expect: 0.00156829
Length: 111, Idn/Pos/Gap = 27/55/3 (24%/49%/2%)

Query:  39 IGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + E T+Q   +P+ +   P      +++ +  L +RNI +   +ED   LF  YG + ++
Sbjct: 283 VTEVTQQSDNEPELT---PEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEV 339

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
            I  D +  + +GF +V+    E A  A  +LD    + R++ +  A+ ++
Sbjct: 340 HIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKK 390

gb|AAF73893.1| enhancer binding protein-2; EBP2 [Entamoeba histolytica]
(196 aa)

Score: 46 bits (108), Expect: 0.00043029
Length: 90, Idn/Pos/Gap = 27/54/4 (30%/60%/4%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWD-RQLRRIRGFAFVRLQTLEQAEAAIAA 129
           + V+N+ +  + EDL E+F+ +  V    + ++ R   R +G+ FV +++ E  +AA+  
Sbjct: 106 IFVKNLAYAIKDEDLKEIFKEFNVVSAKVVTYNHRGNVRSKGYGFVEVKSAEDQKAAVEK 165

Query: 130 LDGSTMRERIIAVKRA---EYERGEGPVSQ 156
           L+G+T +ER I V +A   + ++ E PV++
Sbjct: 166 LNGTTQKERAIGVFKAYKKQEQKEETPVTK 195

gb|EAL02935.1| hypothetical protein CaO19.1646 [Candida albicans SC5314]
(841 aa)

Score: 46 bits (108), Expect: 0.00043029
Length: 74, Idn/Pos/Gap = 25/45/1 (33%/60%/1%)

Query:  75 NIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGST 134
           N+PF   ++DLLELF  +G +  + +P  +  +  RGFAFV    +++AE A++ L+G  
Sbjct: 723 NLPFEATRKDLLELFGAFGQLKSVRVP-KKFDQSARGFAFVEFNLMKEAETAMSQLEGVH 781

Query: 135 MRERIIAVKRAEYE 148
           +  R + ++ AE +
Sbjct: 782 LLGRRLVMQYAEQD 795


Score: 44 bits (104), Expect: 0.00156829
Length: 111, Idn/Pos/Gap = 27/55/3 (24%/49%/2%)

Query:  39 IGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + E T+Q   +P+ +   P      +++ +  L +RNI +   +ED   LF  YG + ++
Sbjct: 283 VTEVTQQSDNEPELT---PEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEV 339

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
            I  D +  + +GF +V+    E A  A  +LD    + R++ +  A+ ++
Sbjct: 340 HIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILPADKKK 390

dbj|BAA77714.1| RNA-binding protein [Anabaena variabilis]
(103 aa)

Score: 46 bits (108), Expect: 0.000441196
Length: 78, Idn/Pos/Gap = 26/44/0 (33%/56%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +   ++ L  +F  YG V  + +P DR+  R+RGF FV + +  +  AAI 
Sbjct:   1 MSVYVGNLSYDVTEDSLNPVFAEYGSVKRVQLPTDRETGRMRGFGFVEMGSDAEETAAIE  60

Query: 129 ALDGSTMRERIIAVKRAE 146
           ALDG+    R + V +A+
Sbjct:  61 ALDGAEWMGRDLKVNKAK  78

ref|NP_849523.1| glycine-rich RNA-binding protein 8 (GRP8) (CCR1) [Arabidopsis thaliana]
(126 aa)

Score: 46 bits (108), Expect: 0.000441196
Length: 74, Idn/Pos/Gap = 27/38/0 (36%/51%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V  + + T  EDL   F  +GDVID  I  DR+  R RGF FV  +  +    AI  ++G
Sbjct:  10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG  69

Query: 133 STMRERIIAVKRAE 146
             +  R+I V  A+
Sbjct:  70 KELDGRVITVNEAQ  83

emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
ref|NP_195637.1| glycine-rich RNA-binding protein 8 (GRP8) (CCR1) [Arabidopsis thaliana]
sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 (CCR1 protein)
gb|AAA32854.1| RNA-binding protein
gb|AAA20201.1| ORF
(169 aa)

Score: 46 bits (108), Expect: 0.000441196
Length: 74, Idn/Pos/Gap = 27/38/0 (36%/51%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V  + + T  EDL   F  +GDVID  I  DR+  R RGF FV  +  +    AI  ++G
Sbjct:  10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG  69

Query: 133 STMRERIIAVKRAE 146
             +  R+I V  A+
Sbjct:  70 KELDGRVITVNEAQ  83

gb|EAA74887.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
ref|XP_391240.1| hypothetical protein FG11064.1 [Gibberella zeae PH-1]
(127 aa)

Score: 46 bits (108), Expect: 0.00044862
Length: 75, Idn/Pos/Gap = 31/39/0 (41%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ + T  E L + F  +G+V D  I  DR   R RGF FV   T EQA AA+ AL
Sbjct:   4 LYVGNLSWNTTDETLRQTFSEFGEVTDSIIMRDRDTGRARGFGFVTFSTEEQATAAVDAL  63

Query: 131 DGSTMRERIIAVKRA 145
           +   +  R I V  A
Sbjct:  64 NEQELDGRRIRVNVA  78

gb|AAA79045.1| 24 kDa RNA binding protein
pir||T09108 RNA binding protein, 24K, chloroplast - spinach (fragment)
(220 aa)

Score: 46 bits (108), Expect: 0.000452379
Length: 81, Idn/Pos/Gap = 28/40/0 (34%/49%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ +    + L  LF   GDV++  + +DR   R RGF FV   +  +   AI +LDG
Sbjct: 139 VGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIESLDG 198

Query: 133 STMRERIIAVKRAEYERGEGP 153
             +  R I V  AE  +  GP
Sbjct: 199 VDLNGRSIRVTAAEARQRRGP 219

dbj|BAB08354.1| unnamed protein product [Arabidopsis thaliana]
(112 aa)

Score: 46 bits (108), Expect: 0.000452379
Length: 67, Idn/Pos/Gap = 21/41/0 (31%/61%/0%)

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
           T  + L +LF P+G + +  +  D+Q +R +GF F+  ++ + A+ A+ AL+G  +  R+
Sbjct:  32 TTDQSLRQLFAPFGQITESRLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRL  91

Query: 140 IAVKRAE 146
           I V+ A+
Sbjct:  92 IFVETAK  98

gb|AAH59002.1| Ataxin 2 binding protein 1, isoform gamma [Mus musculus]
gb|AAV74337.1| ataxin-2 binding protein 1 variant 1 [Mus musculus]
(396 aa)

Score: 46 bits (108), Expect: 0.000463846
Length: 114, Idn/Pos/Gap = 37/56/5 (32%/49%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPF--PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   P+  +ES+ Q    L V NIPF  R  DL ++F  
Sbjct:  80 SAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPK-RLHVSNIPFRFRDPDLRQMFGQ 138

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 139 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190

dbj|BAC37531.1| unnamed protein product [Mus musculus]
(374 aa)

Score: 46 bits (108), Expect: 0.000467732
Length: 99, Idn/Pos/Gap = 33/52/4 (33%/52%/4%)

Query:  47 AAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQL 106
           AA+  + +  P+ P+E   Q    L V NIPF  R  DL ++F  +G ++D+ I ++   
Sbjct:  79 AAQTDNQQLHPSDPTEK--QQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-- 134

Query: 107 RRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           R  +GF FV  +T   A+ A   L+G+ +  R I V  A
Sbjct: 135 RGSKGFGFVTFETSSDADRAREKLNGTIVEGRKIEVNNA 173

emb|CAH91712.1| hypothetical protein [Pongo pygmaeus]
(466 aa)

Score: 46 bits (108), Expect: 0.000467732
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct: 116 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 174

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 175 DLRQMFGQFGKILDVEIIFNG--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 232

Query: 144 RA 145
            A
Sbjct: 233 NA 234

gb|AAC78728.1| translation initiation factor eIF3 p44 subunit [Homo sapiens]
(320 aa)

Score: 46 bits (108), Expect: 0.000471651
Length: 108, Idn/Pos/Gap = 34/52/5 (31%/48%/4%)

Query:  44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI  98
           + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 209 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 268

Query:  99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           ++  D+   + +GFAF+     E    AIA + G      I+ V+ A+
Sbjct: 269 YLAKDKTTGQSKGFAFISFHRREDRARAIAGVSGFGYDHLILNVEWAK 316

ref|NP_061193.2| ataxin 2-binding protein 1 isoform 4 [Homo sapiens]
(397 aa)

Score: 46 bits (108), Expect: 0.000475603
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

dbj|BAA91472.1| unnamed protein product [Homo sapiens]
sp|Q9NWB1|A2BP1_HUMAN Ataxin 2-binding protein 1
(397 aa)

Score: 46 bits (108), Expect: 0.000487658
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQADDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

gb|AAD07877.1| ss-DNA binding protein 12RNP2 precursor [Helicobacter pylori 26695]
pir||C64623 ss-DNA binding protein 12RNP2 precursor - Helicobacter pylori (strain 26695)
ref|NP_207620.1| ss-DNA binding protein 12RNP2 precursor [Helicobacter pylori 26695]
(82 aa)

Score: 46 bits (108), Expect: 0.000495864
Length: 75, Idn/Pos/Gap = 25/40/1 (33%/53%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ +    E + ELF  +G V ++ + +DR+ ++ +GF FV +Q  E    AIA L
Sbjct:   4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-ESVSEAIAKL  62

Query: 131 DGSTMRERIIAVKRA 145
           D +    R I V  A
Sbjct:  63 DNTDFMGRTIRVTEA  77

ref|NP_067452.1| ataxin 2 binding protein 1 isoform gamma [Mus musculus]
dbj|BAA95079.1| RNA-binding protein [Mus musculus]
sp|Q9JJ43|A2BP1_MOUSE Ataxin 2-binding protein 1
(396 aa)

Score: 46 bits (108), Expect: 0.000504208
Length: 114, Idn/Pos/Gap = 37/56/5 (32%/49%/4%)

Query:  34 SGATLIGETTEQGAAKPKSSRPF--PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRP  91
           S  T+ G  T+   A P   +P   P+  +ES+ Q    L V NIPF  R  DL ++F  
Sbjct:  80 SAQTVSGTATQTDDAAPTDGQPQTQPSENTESKSQPK-RLHVSNIPFRFRDPDLRQMFGQ 138

Query:  92 YGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V  A
Sbjct: 139 FGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 190

ref|XP_391934.1| similar to ENSANGP00000021554 [Apis mellifera]
(285 aa)

Score: 46 bits (108), Expect: 0.000508433
Length: 100, Idn/Pos/Gap = 28/46/6 (28%/46%/6%)

Query:  33 PSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPY  92
           P G+  I      G +K   S     R       ++  + + N+   T   DL EL +P+
Sbjct: 172 PQGSKYIPPGMRDGGSKRGDSMQMQRR------DDTTAIRISNLSESTTDADLDELVKPF 225

Query:  93 GDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           G V+  ++  D+Q    +GFA+V  +   +A  AIA L+G
Sbjct: 226 GSVLKFYLAKDKQTNLCKGFAYVHFKYRMEAAKAIATLNG 265

gb|AAH80452.1| MGC89658 protein [Xenopus tropicalis]
ref|NP_001007946.1| MGC89658 protein [Xenopus tropicalis]
(253 aa)

Score: 46 bits (108), Expect: 0.000508433
Length: 82, Idn/Pos/Gap = 29/48/0 (35%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+++ + +  AE A+
Sbjct:   9 NTSLFVRNVADATRPEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYIQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             L+   +  R I ++ A+ +R
Sbjct:  69 YNLNRKWVCGRQIEIQFAQGDR  90

dbj|BAB10805.1| eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
(308 aa)

Score: 46 bits (108), Expect: 0.000512693
Length: 108, Idn/Pos/Gap = 32/51/6 (29%/47%/5%)

Query:  36 ATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDV  95
           A  +  +  +GA +        +R  E+ ++      V N+   TR  DL+ELFRP+G V
Sbjct: 179 AAYVPPSMREGADRKAGGSDMRSRHDENSVR------VTNLSEDTRGPDLMELFRPFGAV 232

Query:  96 IDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
               +  D++    RGF FV   + E A+ AI  L+G      I+ V+
Sbjct: 233 TRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 280

ref|NP_001017228.1| hypothetical protein LOC549982 [Xenopus tropicalis]
(166 aa)

Score: 46 bits (108), Expect: 0.00052132
Length: 75, Idn/Pos/Gap = 27/44/0 (36%/58%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T +E L ++F  YG V ++ +  DR+ +R RGF FV  +  E A+ A+ A+
Sbjct:   8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

gb|AAP41925.1| ataxin 2-binding protein variant 1 [Homo sapiens]
(370 aa)

Score: 46 bits (108), Expect: 0.00052132
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

gb|AAH71575.1| Unknown (protein for MGC:87185) [Homo sapiens]
(69 aa)

Score: 46 bits (108), Expect: 0.000548083
Length: 49, Idn/Pos/Gap = 22/31/0 (44%/63%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ  57

dbj|BAC25110.1| unnamed protein product [Mus musculus]
(69 aa)

Score: 46 bits (108), Expect: 0.000552675
Length: 49, Idn/Pos/Gap = 22/31/0 (44%/63%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+V+
Sbjct:   9 NTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQ  57

ref|ZP_00360471.1| COG0724: RNA-binding proteins (RRM domain) [Polaromonas sp. JS666]
(134 aa)

Score: 46 bits (108), Expect: 0.000552675
Length: 83, Idn/Pos/Gap = 27/43/0 (32%/51%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+  R EDL + F  +G +    +  +R   R +GF FV + +  +A+AAIA +
Sbjct:   5 LYVGNLPYTVRDEDLQQSFGAFGSITSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIAGM  64

Query: 131 DGSTMRERIIAVKRAEYERGEGP 153
           +G ++  R I V  A       P
Sbjct:  65 NGQSLGGRSITVNEARPMEARPP  87

ref|XP_512361.1| PREDICTED: DNA (cytosine-5-)-methyltransferase 1 [Pan troglodytes]
(2198 aa)

Score: 46 bits (108), Expect: 0.000557306
Length: 91, Idn/Pos/Gap = 31/45/5 (34%/49%/5%)

Query:   44 EQGAAKPKSSRPFPNRPSESELQN-----SVGLMVRNIPFGTRQEDLLELFRPYGDVIDI   98
            + G   P S R   +R  ES   N     +  + V N+   TR+ DL ELFRP+G +  I
Sbjct: 2010 KTGKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRI 2069

Query:   99 FIPWDRQLRRIRGFAFVRLQTLEQAEAAIAA  129
            ++  D+   + +GFAF+     E A  AIA 
Sbjct: 2070 YLAKDKTTGQSKGFAFISFHRREDAARAIAG 2100

gb|AAH49046.1| Similar to eukaryotic translation initiation factor 3, subunit 4 delta, 44kDa [Danio rerio]
ref|NP_957293.1| eukaryotic translation initiation factor 3, subunit 4 delta [Danio rerio]
(293 aa)

Score: 45 bits (107), Expect: 0.000566684
Length: 90, Idn/Pos/Gap = 29/48/4 (32%/53%/4%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           PNR ++    ++  + V N+   TR+ DL ELFRP+G +  I++  D+   + +GFA + 
Sbjct: 204 PNRRAD----DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKNTGQSKGFALIS 259

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
               E A  AIA + G      I+ V+ A+
Sbjct: 260 FHRREDAARAIAGVSGFGYDHLILNVEWAK 289

gb|AAH84231.1| LOC495068 protein [Xenopus laevis]
(251 aa)

Score: 45 bits (107), Expect: 0.00057622
Length: 82, Idn/Pos/Gap = 29/48/0 (35%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           +  L VRN+   TR EDL   F  YG ++D+++P D   RR RGFA+++ + +  AE A+
Sbjct:   9 NTSLFVRNVGDATRPEDLRREFGRYGPIVDVYVPLDFYNRRPRGFAYIQFEDVRDAEDAL  68

Query: 128 AALDGSTMRERIIAVKRAEYER 149
             L+   +  R I ++ A+ +R
Sbjct:  69 YNLNRKWVCGRQIEIQFAQGDR  90

ref|XP_468182.1| putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
ref|XP_507016.1| PREDICTED OSJNBa0054K20.22 gene product [Oryza sativa (japonica cultivar-group)]
dbj|BAD19862.1| putative initiation factor 3g [Oryza sativa (japonica cultivar-group)]
(289 aa)

Score: 45 bits (107), Expect: 0.000590826
Length: 73, Idn/Pos/Gap = 29/41/0 (39%/56%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+   TR+ DLLELFR +G V  +++  D++    RGF FV     E AE AI+ L+G
Sbjct: 212 VTNLSEDTREPDLLELFRTFGPVSRVYVAVDQKTGASRGFGFVNFVHREDAEKAISKLNG 271

Query: 133 STMRERIIAVKRA 145
                 I+ V+ A
Sbjct: 272 YGYDNLILRVEWA 284

ref|NP_893493.1| RNA-binding protein RbpD [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
emb|CAE19835.1| RNA-binding protein RbpD [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
(92 aa)

Score: 45 bits (107), Expect: 0.000605801
Length: 90, Idn/Pos/Gap = 30/46/0 (33%/51%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+ + T +EDL +LF+ YG V +  IP +R   R RGF FV + +    + AI  L
Sbjct:   3 IFIGNLSWKTEEEDLKDLFKTYGAVRNCTIPLERDSGRKRGFGFVEMTSESSEKTAIDDL  62

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGA 160
                  R I V +AE +      S+H G+
Sbjct:  63 QDVEWMGREIRVNKAEQKDRSRRNSRHHGS  92

ref|NP_849524.1| glycine-rich RNA-binding protein 8 (GRP8) (CCR1) [Arabidopsis thaliana]
(92 aa)

Score: 45 bits (107), Expect: 0.000621157
Length: 80, Idn/Pos/Gap = 30/41/1 (37%/51%/1%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V  + + T  EDL   F  +GDVID  I  DR+  R RGF FV  +  +    AI  ++G
Sbjct:  10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG  69

Query: 133 STMRERIIAVKRAEYERGEG 152
             +  R+I V  A+  RG G
Sbjct:  70 KELDGRVITVNEAQ-SRGSG  88

gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
(205 aa)

Score: 45 bits (107), Expect: 0.000636901
Length: 75, Idn/Pos/Gap = 26/40/0 (34%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L E F  YG++    +  DR+  R RGF FV+    E A+ A+ A+
Sbjct:   7 LFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAKDAMDAM  66

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V  A
Sbjct:  67 NGQSLDGRTIRVNEA  81

gb|AAL62399.1| eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
ref|NP_196219.2| eukaryotic translation initiation factor 3G, putative / eIF3g, putative [Arabidopsis thaliana]
gb|AAN72138.1| eukaryotic translation initiation factor 3 subunit-like protein [Arabidopsis thaliana]
(276 aa)

Score: 45 bits (107), Expect: 0.000642238
Length: 108, Idn/Pos/Gap = 32/51/6 (29%/47%/5%)

Query:  36 ATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDV  95
           A  +  +  +GA +        +R  E+ ++      V N+   TR  DL+ELFRP+G V
Sbjct: 147 AAYVPPSMREGADRKAGGSDMRSRHDENSVR------VTNLSEDTRGPDLMELFRPFGAV 200

Query:  96 IDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
               +  D++    RGF FV   + E A+ AI  L+G      I+ V+
Sbjct: 201 TRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248

ref|NP_223484.1| hypothetical protein jhp0766 [Helicobacter pylori J99]
gb|AAD06345.1| putative [Helicobacter pylori J99]
pir||F71890 hypothetical protein jhp0766 - Helicobacter pylori (strain J99)
(82 aa)

Score: 45 bits (107), Expect: 0.000669598
Length: 75, Idn/Pos/Gap = 25/40/1 (33%/53%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ +    E + ELF  +G V ++ + +DR+ ++ +GF FV +Q  E    AIA L
Sbjct:   4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQE-EGVREAIAKL  62

Query: 131 DGSTMRERIIAVKRA 145
           D +    R I V  A
Sbjct:  63 DNTDFMGRTIRVTEA  77

ref|NP_952377.1| RNA-binding protein [Geobacter sulfurreducens PCA]
gb|AAR34700.1| RNA-binding protein [Geobacter sulfurreducens PCA]
(107 aa)

Score: 45 bits (107), Expect: 0.000692323
Length: 79, Idn/Pos/Gap = 27/44/0 (34%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V ++ +   ++DL  LF   G V  + I  D +  R +G  +VR+ T E+A+ AI  L
Sbjct:   5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL  64

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG+ +R R+I V  A  ++
Sbjct:  65 DGALLRNRVITVSVARPQK  83

ref|NP_523773.1| CG4886-PA [Drosophila melanogaster]
gb|AAF01031.1| cyclophilin-33 [Drosophila melanogaster]
gb|AAF57839.1| CG4886-PA [Drosophila melanogaster]
gb|AAL28969.1| LD35248p [Drosophila melanogaster]
sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E (PPIase E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
(300 aa)

Score: 45 bits (107), Expect: 0.000698123
Length: 61, Idn/Pos/Gap = 25/36/0 (40%/59%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI +P D + +R RGFAF+  +  E A AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPV  85

Query: 149 R 149
           R
Sbjct:  86 R  86

gb|AAL09839.1| RNA binding protein [Bacteroides fragilis]
(80 aa)

Score: 45 bits (107), Expect: 0.000715819
Length: 77, Idn/Pos/Gap = 22/45/0 (28%/58%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + + N+ +  ++ DL ++   YG V  + +  DR+ R+ +GFAFV +   ++A+  I+
Sbjct:   1 MNMYIGNLSYRVKEADLRQVMEEYGTVDSVKLIIDRETRKSKGFAFVEMPNDDEAKNVIS  60

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G+    R + VKR+
Sbjct:  61 ELNGAEYEGRQMVVKRS  77

gb|EAA71543.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
ref|XP_384017.1| hypothetical protein FG03841.1 [Gibberella zeae PH-1]
(1163 aa)

Score: 45 bits (107), Expect: 0.000721817
Length: 78, Idn/Pos/Gap = 26/40/0 (33%/51%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  + V N+ + T  + L   F+ YG ++D  +  DR   R RGF FV   + ++AE AI
Sbjct:   2 SAKVYVGNLGWNTTDDSLRNAFQDYGQILDSIVMRDRDTGRSRGFGFVTFGSSQEAETAI  61

Query: 128 AALDGSTMRERIIAVKRA 145
            +L+   +  R I V  A
Sbjct:  62 ISLNEQELDGRRIKVNLA  79

gb|AAB68082.1| Ypr112cp [Saccharomyces cerevisiae]
ref|NP_015437.1| Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains [Saccharomyces cerevisiae]
pir||S59777 hypothetical protein YPR112c - yeast (Saccharomyces cerevisiae)
(887 aa)

Score: 45 bits (106), Expect: 0.000733963
Length: 131, Idn/Pos/Gap = 34/66/5 (25%/50%/3%)

Query:  23 DSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSES---ELQNSVG-LMVRNIPF  78
           +S + T + S S AT   E+ +    + +  R  P +  E    E  N  G L +RNI +
Sbjct: 296 ESEAETREKSSSYATEQNESLDT-KKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILY 354

Query:  79 GTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRER 138
            +++ED  +LF P+G++ ++ +  D +  + +GFA+V  +  + A  A   LD    + R
Sbjct: 355 TSKEEDFRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGR 414

Query: 139 IIAVKRAEYER 149
           ++ +   E ++
Sbjct: 415 LLHILPGEEKK 425

gb|EAA45208.2| ENSANGP00000023706 [Anopheles gambiae str. PEST]
ref|XP_310351.2| ENSANGP00000023706 [Anopheles gambiae str. PEST]
(437 aa)

Score: 45 bits (106), Expect: 0.000733963
Length: 127, Idn/Pos/Gap = 37/64/10 (29%/50%/7%)

Query:  21 GGDSLSHTAKDSPSG--ATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPF  78
           GG+ + ++  D   G  A  I E   Q  A P    P P    + +      L V N+  
Sbjct:  84 GGNDMDNSFGDRRRGGEAYFINEKLRQ-LAGPLFEIP-PIEAQDVKFSGRNRLYVGNLTN 141

Query:  79 GTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRER 138
              +E+L+++F+ YG++ ++F      + + + +AFVR+  L  AEAA   LDG+T + R
Sbjct: 142 DVTEEELVDMFKVYGEISEVF------MNKEKNYAFVRVDYLSNAEAAKRGLDGTTRKNR 195

Query: 139 IIAVKRA 145
           ++ V+ A
Sbjct: 196 VLRVRFA 202

gb|AAW25574.1| unknown [Schistosoma japonicum]
(281 aa)

Score: 45 bits (106), Expect: 0.000752567
Length: 119, Idn/Pos/Gap = 35/59/18 (29%/49%/15%)

Query:  41 ETTEQGAAKPKSSRPFPNRPS--ESELQNSVG--------------LMVRNIPFGTRQED  84
           E TE+   +P+S RP    P     +  N+ G              + V N+   T  +D
Sbjct: 156 EPTEESVKEPQSDRPGRYIPPSLRGDAANTTGSSMSTDKRPFDENTVRVTNLAPDTTVDD 215

Query:  85 LLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           L  +F  +G V+ I+   D+  ++ RGFAF+  +TLE+A++AI  ++G  MR   + +K
Sbjct: 216 LKAMFSAFGHVMRIYPAKDKLTQQNRGFAFISFKTLEEAKSAIYGVNG--MRHNHVVLK 272

emb|CAE61481.1| Hypothetical protein CBG05375 [Caenorhabditis briggsae]
(180 aa)

Score: 45 bits (106), Expect: 0.000765231
Length: 90, Idn/Pos/Gap = 26/48/1 (28%/53%/1%)

Query:  53 SRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGF 112
           ++  P    E +  +S  + + N+ FG+  ED+ E F+  G++I   IP D+  ++ + F
Sbjct:  38 TKMIPPTAEEQKEIDSRSVFIGNVDFGSSIEDIEEHFKGCGEIIRTTIPKDKFTKKQKNF  97

Query: 113 AFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
           A++   + E  E A+  ++GS  R R I V
Sbjct:  98 AYIEFASAESIENAL-VMNGSLFRSRQIVV 126

ref|ZP_00310979.1| COG0724: RNA-binding proteins (RRM domain) [Cytophaga hutchinsonii]
(143 aa)

Score: 45 bits (106), Expect: 0.000765231
Length: 85, Idn/Pos/Gap = 28/47/1 (32%/55%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V ++PF   + +L E F  YG+V  + I  D+   R +GF FV +     A+ AI 
Sbjct:   1 MNIFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKGFGFVEMPDDAAAQKAID  60

Query: 129 ALDGSTMRERIIAVKRAEYERGEGP 153
            L+G+ +  R I V ++E E+ +GP
Sbjct:  61 ELNGAEVNGRTIVVNKSE-EKKDGP  84

gb|EAA57658.1| hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
ref|XP_410154.1| hypothetical protein AN6017.2 [Aspergillus nidulans FGSC A4]
(785 aa)

Score: 45 bits (106), Expect: 0.000771642
Length: 76, Idn/Pos/Gap = 24/40/0 (31%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+     +++L +LF  +G V  +F+  DR+ +R +GFAF+       A  A   +
Sbjct: 707 LRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDAARACDKM 766

Query: 131 DGSTMRERIIAVKRAE 146
           DG   R  I+ V+ A+
Sbjct: 767 DGFGYRHLILRVEFAK 782

gb|AAH93329.1| Unknown (protein for MGC:112471) [Danio rerio]
ref|NP_001017678.1| hypothetical protein LOC550373 [Danio rerio]
(302 aa)

Score: 45 bits (106), Expect: 0.000784627
Length: 61, Idn/Pos/Gap = 24/35/0 (39%/57%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI IP D +  + RGFAF+  +  E + AAI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDITDIQIPLDYETEKHRGFAFIEFELAEDSAAAIDNMNESELFGRTIRVNIAKPM  85

Query: 149 R 149
           R
Sbjct:  86 R  86

emb|CAB78029.1| putative protein [Arabidopsis thaliana]
pir||E85091 hypothetical protein AT4g09050 [imported] - Arabidopsis thaliana
(211 aa)

Score: 45 bits (106), Expect: 0.00079783
Length: 61, Idn/Pos/Gap = 21/37/1 (34%/60%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L+ +N+P+ +  ED+  LF  YG VIDI +   ++ R  RG  F+ + + E+A  A+ +L
Sbjct:  96 LIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERN-RGLVFIEMASPEEAATALKSL 154

Query: 131 D 131
           +
Sbjct: 155 E 155

dbj|BAC38374.1| unnamed protein product [Mus musculus]
(159 aa)

Score: 45 bits (106), Expect: 0.000804515
Length: 87, Idn/Pos/Gap = 22/44/0 (25%/50%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           E  +   L +R +P GT  +DL++L +PYG ++      D+   + +G+ FV   +   A
Sbjct:  50 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 109

Query: 124 EAAIAALDGSTMRERIIAVKRAEYERG 150
           + A+A+L  + ++ ++         RG
Sbjct: 110 QKAVASLKANGVQAQMAKSSCDSVHRG 136

gb|AAM74138.1| U-rich RNA-binding protein UBP-2 [Trypanosoma cruzi]
(166 aa)

Score: 45 bits (106), Expect: 0.000804515
Length: 87, Idn/Pos/Gap = 30/50/2 (34%/57%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           LMV  IP    +  L +LF  YG +  + I  DR+ R+ RG+ FV+ Q+   A+ AIA L
Sbjct:  31 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGFVKFQSGSSAQQAIAGL  90

Query: 131 DG-STMRERI-IAVKRAEYERGEGPVS 155
           +G + + +R+ +A+  + ++R    VS
Sbjct:  91 NGFNILNKRLKVALAASGHQRNRNGVS 117

ref|ZP_00175351.1| COG0724: RNA-binding proteins (RRM domain) [Crocosphaera watsonii WH 8501]
(94 aa)

Score: 45 bits (106), Expect: 0.000818053
Length: 92, Idn/Pos/Gap = 32/48/3 (34%/52%/3%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +     DL ++F  YG V  + +  DR+  R RGF FV + T  + E+AI 
Sbjct:   1 MSIYVGNLSYDVTDADLEQVFAEYGTVKRVQLLTDRETGRPRGFGFVEMDTETEEESAIE  60

Query: 129 ALDGSTMRERIIAVKRA---EYERGEGPVSQH 157
           ALDG+    R + V +A   E  R +G  S H
Sbjct:  61 ALDGAEWMGRALRVNKARPREDRRSQGRGSTH  92

gb|EAK90570.1| splicing factor RRM domain containing protein; T22E16.120 SC35-like splicing factor [Cryptosporidium parvum]
gb|EAL35244.1| dentin phosphoryn [Cryptosporidium hominis]
(286 aa)

Score: 45 bits (106), Expect: 0.000824907
Length: 127, Idn/Pos/Gap = 42/58/13 (33%/45%/10%)

Query:  61 SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTL 120
           SE ++     L+VRN+ F T    +   F  YG V D+++P D   RR RGF FV     
Sbjct:  82 SEVDVSEGCSLLVRNLRFETSPGRVRHHFERYGPVRDVYLPLDYYTRRPRGFGFVEYMDP 141

Query: 121 EQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
             A+ A+  LDGS +    I V  A ++R + P +             RR +R  GR  R
Sbjct: 142 RDAQDAVNRLDGSLLDGSTIRVVVA-HDRRKSPETM------------RRIQRDSGRGPR 188

Query: 181 RRRPRSR 187
              P SR
Sbjct: 189 MGGPPSR 195

gb|EAL45282.1| RNA-binding protein, putative [Entamoeba histolytica HM-1:IMSS]
(376 aa)

Score: 45 bits (106), Expect: 0.000824907
Length: 74, Idn/Pos/Gap = 24/39/0 (32%/52%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           E Q  + + V N+ F   +E + + F P+G +I + I +  Q    RGFAF++ Q  E  
Sbjct: 118 EPQIGLIIYVANLHFDITEELIHKYFDPFGPIIGVDIVYKPQTNECRGFAFIKYQKTEDG 177

Query: 124 EAAIAALDGSTMRE 137
             AI AL+   ++E
Sbjct: 178 NKAIEALNDKEVQE 191

emb|CAA11894.1| cp33Hv [Hordeum vulgare subsp. vulgare]
pir||T05730 probable RNA-binding protein cp33 precursor - barley
(344 aa)

Score: 45 bits (106), Expect: 0.000831819
Length: 95, Idn/Pos/Gap = 30/46/0 (31%/48%/0%)

Query:  56 FPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFV 115
           +P R   +  Q    + V N+P+     +L   F   G V D+ I +D+   R RGFAFV
Sbjct:  95 YPPRNRPALGQEPGRIYVGNLPYTFTAAELTAAFSEAGSVDDVQIIYDKITDRSRGFAFV 154

Query: 116 RLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERG 150
            + T E+A  A+   +G+ +  R + V   E  RG
Sbjct: 155 TMATAEEAAKAVQMFNGALLGGRTVRVNFPEVPRG 189

emb|CAI29625.1| hypothetical protein [Pongo pygmaeus]
(382 aa)

Score: 45 bits (106), Expect: 0.000838788
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

pir||S71453 glycine-rich RNA-binding protein, low-temperature-responsive - barley
gb|AAB07749.1| low temperature-responsive RNA-binding protein
(161 aa)

Score: 45 bits (106), Expect: 0.000852903
Length: 79, Idn/Pos/Gap = 29/39/0 (36%/49%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V  + + T  + L   F  YGDVID  I  DR+  R RGF FV   + E    AI A++G
Sbjct:  10 VGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNG  69

Query: 133 STMRERIIAVKRAEYERGE 151
             +  R I V  A+  R +
Sbjct:  70 QDLDGRNITVNEAQSRRSD  88

emb|CAD28499.2| hypothetical protein [Homo sapiens]
(262 aa)

Score: 45 bits (106), Expect: 0.000852903
Length: 122, Idn/Pos/Gap = 38/57/5 (31%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    S  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  73 SEQSPADTSAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 131

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 132 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 189

Query: 144 RA 145
            A
Sbjct: 190 NA 191

ref|NP_567594.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
dbj|BAD44597.1| putative protein [Arabidopsis thaliana]
(152 aa)

Score: 45 bits (106), Expect: 0.000860049
Length: 76, Idn/Pos/Gap = 22/44/0 (28%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           +MVRN+PF T ++ L   F  +G++ ++ +  D  ++R +G+AF++  + + A  AI  +
Sbjct:  42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETM 101

Query: 131 DGSTMRERIIAVKRAE 146
           D      R+I +  A+
Sbjct: 102 DRRMYNGRMIYIDIAK 117

ref|XP_535833.1| PREDICTED: hypothetical protein XP_535833 [Canis familiaris]
(652 aa)

Score: 45 bits (106), Expect: 0.000860049
Length: 93, Idn/Pos/Gap = 33/49/5 (35%/52%/5%)

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
           T + DL E+F  YG + D+ I +D+Q RR RGFAFV  + ++ A+ A    +G  +  R 
Sbjct: 312 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 371

Query: 140 IAVKRAEYERGEGPVSQHAGASDGR--RGQSRR 170
           I   R ++   + P +   G   GR   G SRR
Sbjct: 372 I---RVDFSITKRPHTPTPGIYMGRPTYGSSRR 401

gb|AAO75891.1| putative RNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
ref|NP_809697.1| putative RNA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
(81 aa)

Score: 45 bits (106), Expect: 0.000867255
Length: 77, Idn/Pos/Gap = 24/41/0 (31%/53%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + L + N+ +  ++ DL  +   YG V  + +  DR+ RR +GFAF+ +    +A  AI 
Sbjct:   1 MNLYIGNLNYNVKESDLRNVMEEYGAVASVKLITDRETRRSKGFAFIEMPDDTEAANAIK  60

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G+    R + VK A
Sbjct:  61 ELNGAEYVGRPMVVKEA  77

gb|AAX07506.1| unknown [Gemmata sp. Wa1-1]
(163 aa)

Score: 45 bits (106), Expect: 0.000874522
Length: 76, Idn/Pos/Gap = 27/41/0 (35%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ +G   E L  +F PYG V    +  DR   R +GF FV + + ++A+AAIA +
Sbjct:  66 LYVGNLGYGVTDEQLRGMFGPYGSVQTAQVIMDRDTGRSKGFGFVEMNSDQEAQAAIAGM 125

Query: 131 DGSTMRERIIAVKRAE 146
           +G     R + V  A+
Sbjct: 126 NGQMSEGRALTVNEAK 141

emb|CAC35875.1| putative protein [Arabidopsis thaliana]
(768 aa)

Score: 45 bits (106), Expect: 0.000874522
Length: 76, Idn/Pos/Gap = 24/41/0 (31%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  +P+ T +E+L+E F  +GD+ ++ +  D+  R  RG AFV     E A+ A+  L
Sbjct: 257 LFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKL 316

Query: 131 DGSTMRERIIAVKRAE 146
           D    + R + +  A+
Sbjct: 317 DKLPFQGRTLHILPAK 332

emb|CAH77570.1| conserved hypothetical protein [Plasmodium chabaudi]
(535 aa)

Score: 45 bits (106), Expect: 0.000881849
Length: 84, Idn/Pos/Gap = 25/48/2 (29%/57%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V+NIP  T + +LLELF+P+G + +I +  ++ +     +A V   T E+A+  +  +
Sbjct:  32 LCVKNIPKETTENELLELFKPFGSIENINLKVNKNVGPYAIYAHVYFGTPEEAKRCLKQM  91

Query: 131 DGSTMRERIIAV--KRAEYERGEG 152
           +G  ++ R + +  K+   + GEG
Sbjct:  92 NGKILKGRALRIDYKKNNTKLGEG 115

ref|NP_849377.1| glycine-rich RNA-binding protein (GRP2) [Arabidopsis thaliana]
(153 aa)

Score: 45 bits (106), Expect: 0.000911778
Length: 78, Idn/Pos/Gap = 28/39/0 (35%/50%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L +  + +GT    L + F  +GDV+D  +  DR+  R RGF FV       A AAI
Sbjct:  34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI  93

Query: 128 AALDGSTMRERIIAVKRA 145
           + +DG  +  R I V  A
Sbjct:  94 SEMDGKELNGRHIRVNPA 111

emb|CAB78427.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
emb|CAB36849.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gb|AAM62842.1| glycine-rich RNA-binding protein AtGRP2-like [Arabidopsis thaliana]
gb|AAL62353.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis thaliana]
gb|AAN72208.1| glycine-rich RNA-binding protein AtGRP2 - like [Arabidopsis thaliana]
sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2)
ref|NP_193121.1| glycine-rich RNA-binding protein (GRP2) [Arabidopsis thaliana]
(158 aa)

Score: 45 bits (106), Expect: 0.000911778
Length: 78, Idn/Pos/Gap = 28/39/0 (35%/50%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L +  + +GT    L + F  +GDV+D  +  DR+  R RGF FV       A AAI
Sbjct:  34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI  93

Query: 128 AALDGSTMRERIIAVKRA 145
           + +DG  +  R I V  A
Sbjct:  94 SEMDGKELNGRHIRVNPA 111

gb|AAP42138.1| RNA-binding protein UBP-2 [Trypanosoma cruzi]
(166 aa)

Score: 45 bits (106), Expect: 0.000911778
Length: 103, Idn/Pos/Gap = 34/55/5 (33%/53%/4%)

Query:  55 PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAF 114
           P    P    L+N   LMV  IP    +  L +LF  YG +  + I  DR+ R+ RG+ F
Sbjct:  18 PAQMNPEPDLLRN---LMVNYIPTTVDEVQLRQLFERYGPIESVKIVADRETRQSRGYGF  74

Query: 115 VRLQTLEQAEAAIAALDG-STMRERI-IAVKRAEYERGEGPVS 155
           V+ Q+   A+ AIA L+G + + +R+ +A+  + ++R    VS
Sbjct:  75 VKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRNRNGVS 117

ref|XP_470714.1| putative ribonucleoprotein [Oryza sativa]
gb|AAL82527.1| putative ribonucleoprotein [Oryza sativa]
(265 aa)

Score: 45 bits (106), Expect: 0.00095062
Length: 74, Idn/Pos/Gap = 28/41/0 (37%/55%/0%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V N+ +G     L  LF   G+V++  + +DR+  R RGF FV   + E+ E A++ LDG
Sbjct: 184 VGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDG 243

Query: 133 STMRERIIAVKRAE 146
           + M  R I V  AE
Sbjct: 244 ADMDGRQIRVTVAE 257

dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
(162 aa)

Score: 45 bits (105), Expect: 0.000958585
Length: 75, Idn/Pos/Gap = 25/44/0 (33%/58%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  +  E A+ A+ A+
Sbjct:   9 LFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPEDAKDAMEAM  68

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  69 NGKSVDGRQIRVDQA  83

emb|CAA74889.1| ribonucleoprotein [Pisum sativum]
gb|AAG13900.1| 33 kDa ribonucleoprotein [Pisum sativum]
pir||T06817 RNA-binding protein - garden pea
(291 aa)

Score: 45 bits (105), Expect: 0.000966617
Length: 99, Idn/Pos/Gap = 31/48/0 (31%/48%/0%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           A P+ SRP          +  + + V N+ +      L ++F  +G V+   + +DR+  
Sbjct: 185 AAPRGSRPEREERPPRTFEPVLRVYVGNLSWELDDSRLEQVFSEHGKVVSARVVYDRETG 244

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           R RGF FV +   ++   AIAALDG  +  R I V  AE
Sbjct: 245 RSRGFGFVTMSDEKEMNDAIAALDGQILEGRTIKVSVAE 283


Score: 44 bits (103), Expect: 0.00188428
Length: 83, Idn/Pos/Gap = 27/41/0 (32%/49%/0%)

Query:  63 SELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQ 122
           +E      L V N+P+    E L  LF P G V    + ++R+  + RGF FV + T+E+
Sbjct: 103 AEPSEDAKLFVGNLPYDVDSEKLAMLFEPAGTVEIAEVIYNRETDQSRGFGFVTMSTVEE 162

Query: 123 AEAAIAALDGSTMRERIIAVKRA 145
           AEA  A  +      R + V +A
Sbjct: 163 AEAGAAKFNRYDYNGRPLTVNKA 185

gb|EAL25200.1| GA18502-PA [Drosophila pseudoobscura]
(302 aa)

Score: 45 bits (105), Expect: 0.000982883
Length: 61, Idn/Pos/Gap = 24/36/0 (39%/59%/0%)

Query:  89 FRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE 148
           F P+GD+ DI +P D + +R RGFAF+  +  E A +AI  ++ S +  R I V  A+  
Sbjct:  26 FIPFGDIADIQMPVDYESQRHRGFAFIEYEQAEDAASAIDNMNDSELCGRTIRVNLAKPV  85

Query: 149 R 149
           R
Sbjct:  86 R  86

ref|YP_099449.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
emb|CAH07919.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
ref|YP_211848.1| putative RNA-binding protein [Bacteroides fragilis NCTC 9343]
dbj|BAD48915.1| putative RNA-binding protein [Bacteroides fragilis YCH46]
(81 aa)

Score: 45 bits (105), Expect: 0.000991118
Length: 77, Idn/Pos/Gap = 25/42/0 (32%/54%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + V N+ +  ++ DL ++   YG V  + +  DR+ RR +GFAFV +    +A  AI 
Sbjct:   1 MNMYVGNLSYNVKESDLRQVMEEYGVVESVKLITDRETRRSKGFAFVEMPESSEASNAIK  60

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G+    R + VK A
Sbjct:  61 ELNGAEYAGRPMVVKEA  77

ref|YP_099548.1| RNA binding protein [Bacteroides fragilis YCH46]
emb|CAH08059.1| RNA binding protein [Bacteroides fragilis NCTC 9343]
ref|YP_211985.1| RNA binding protein [Bacteroides fragilis NCTC 9343]
dbj|BAD49014.1| RNA binding protein [Bacteroides fragilis YCH46]
(81 aa)

Score: 45 bits (105), Expect: 0.000991118
Length: 77, Idn/Pos/Gap = 22/44/0 (28%/57%/0%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           + + + N+ +  ++ DL ++   YG V  + +  DR+ R+ +GFAFV +   ++A+  I+
Sbjct:   1 MNMYIGNLSYRVKEADLRQVMEEYGTVDSVKLIIDRETRKSKGFAFVEMPNDDEAKNVIS  60

Query: 129 ALDGSTMRERIIAVKRA 145
            L+G+    R + VK A
Sbjct:  61 ELNGAEYEGRQMVVKEA  77

ref|NP_650473.1| CG5213-PA [Drosophila melanogaster]
gb|AAF55205.1| CG5213-PA [Drosophila melanogaster]
gb|AAL90143.1| AT22957p [Drosophila melanogaster]
(251 aa)

Score: 45 bits (105), Expect: 0.000991118
Length: 132, Idn/Pos/Gap = 38/61/8 (28%/46%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RPSE E   S  L V N+P    ++ + ELF  YG+++D+ +   +   R RG AF++ +
Sbjct: 118 RPSEYE-STSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFE 176

Query: 119 TLEQAEAAIAALDGSTMR--ERIIAVKRAEYERGEGPVSQHAGASDGRRGQS-----RRP 171
            +  AE A   +D   +    R + VK  E E+     +        +R  S     RR 
Sbjct: 177 LVRDAEVAKYGMDRYMIEGASRPLTVKFVEREKKGSSSTSSGSQYKDKRKSSPPPYKRRE 236

Query: 172 RRSDGRSTRRRR 183
           R +D   ++R R
Sbjct: 237 RTNDHHVSKRSR 248

dbj|BAB46877.1| hypothetical protein [Macaca fascicularis]
(376 aa)

Score: 45 bits (105), Expect: 0.0010078
Length: 122, Idn/Pos/Gap = 37/57/5 (30%/46%/4%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVG--LMVRNIPFGTRQE  83
           S  +    +  T+ G  T+   A P   +P   +PSE+    S    L V NIPF  R  
Sbjct:  75 SEQSPADTNAQTVSGTATQTDDAAPTDGQP-QTQPSENTENKSQPKRLHVSNIPFRFRDP 133

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R I V 
Sbjct: 134 DLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 191

Query: 144 RA 145
            A
Sbjct: 192 NA 193

ref|XP_468382.1| putative RNA-binding protein RNP1 precursor [Oryza sativa (japonica cultivar-group)]
ref|XP_507042.1| PREDICTED OJ1293_E04.28 gene product [Oryza sativa (japonica cultivar-group)]
dbj|BAD21996.1| putative RNA-binding protein RNP1 precursor [Oryza sativa (japonica cultivar-group)]
dbj|BAD21673.1| putative RNA-binding protein RNP1 precursor [Oryza sativa (japonica cultivar-group)]
(316 aa)

Score: 45 bits (105), Expect: 0.00102475
Length: 94, Idn/Pos/Gap = 28/50/2 (29%/53%/2%)

Query:  52 SSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRG 111
           + +P P  P   E ++   L V N+ +    E L E+F+  G+V+   + +D +  R RG
Sbjct: 221 ADKPKPKLPLYPETEHK--LFVGNLSWTVTSEMLTEMFQKCGNVVGARVLYDGETGRSRG 278

Query: 112 FAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           + FV   T E+ + A+++L+G+ +  R I V  A
Sbjct: 279 YGFVCYSTKEEMDEALSSLNGTELEGREIRVNLA 312


Score: 42 bits (98), Expect: 0.00653234
Length: 80, Idn/Pos/Gap = 25/39/0 (31%/48%/0%)

Query:  75 NIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGST 134
           N+P+      L  + + Y     + + +DR   R RGFAFV + T+E  E  I  LDGS 
Sbjct: 151 NLPYNCDSAQLAGIVQDYATPEMVEVLYDRATGRSRGFAFVTMSTIEDCEQVIKNLDGSL 210

Query: 135 MRERIIAVKRAEYERGEGPV 154
              R + V  A+  + + P+
Sbjct: 211 YSGRTMRVNFADKPKPKLPL 230

emb|CAA05727.1| AtGRP2 [Arabidopsis thaliana]
(150 aa)

Score: 45 bits (105), Expect: 0.00103334
Length: 78, Idn/Pos/Gap = 28/39/0 (35%/50%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L +  + +GT    L + F  +GDV+D  +  DR+  R RGF FV       A AAI
Sbjct:  34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI  93

Query: 128 AALDGSTMRERIIAVKRA 145
           + +DG  +  R I V  A
Sbjct:  94 SEMDGKELNGRHIRVNPA 111

ref|XP_392958.1| similar to sex-lethal [Apis mellifera]
(418 aa)

Score: 45 bits (105), Expect: 0.00105953
Length: 113, Idn/Pos/Gap = 38/58/5 (33%/51%/4%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RPS  E++ +  L V N+P    +  + ++F  YG+++   I  D+     RG AFVR  
Sbjct: 279 RPSGEEIKET-NLYVTNLPRNITESQIDDIFSKYGNIVQKNILKDKLTGLPRGVAFVRFD 337

Query: 119 TLEQAEAAIAALDGSTMR--ERIIAVKRAEYERGEGPVSQHAGASDGRRGQSR 169
             E+A+ AIA L G+        ++VK AE E G+   + +AG   G   QSR
Sbjct: 338 KREEAQEAIARLHGTIPEGGSEPLSVKIAE-EHGKQKAAYYAGWQAG-YNQSR 388

gb|AAH80984.1| Rbm9-prov protein [Xenopus tropicalis]
ref|NP_001008085.1| rbm9-prov protein [Xenopus tropicalis]
(380 aa)

Score: 45 bits (105), Expect: 0.00105953
Length: 124, Idn/Pos/Gap = 34/53/2 (27%/42%/1%)

Query:  22 GDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTR  81
           G   SH    +P+ +T    +T  G+          N  +         L V NIPF  R
Sbjct:  63 GGGQSHAEHSTPATSTANASSTTDGSQTEGQQSQTQNSENSESKPTPKRLHVSNIPFRFR 122

Query:  82 QEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIA 141
             DL ++F  +G ++D+ I ++   R  +GF FV  +T   A+ A   L  + +  R I 
Sbjct: 123 DPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFETSADADRAREKLHSTVVEGRKIE 180

Query: 142 VKRA 145
           V  A
Sbjct: 181 VNNA 184

emb|CAH97904.1| conserved hypothetical protein [Plasmodium berghei]
(245 aa)

Score: 45 bits (105), Expect: 0.00108639
Length: 133, Idn/Pos/Gap = 37/63/11 (27%/47%/8%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           ++N   L++RN+ F T  + + ++F  +G + D+++P D   RR RGF FV     + A+
Sbjct:   2 VENGCSLLIRNLSFET-PDKVRKIFEHFGKIRDVYLPLDHYTRRPRGFGFVEYYDPKHAK  60

Query: 125 AAIAALDGSTMRERIIAVKRAEYERGEGPVSQ--HAGASDGR------RGQSRRPRRSDG 176
            A+  L+ S +  + I +  A+  R      +  H   +D +         +R  RR   
Sbjct:  61 EALNILNNSKIDGKEIRIIVAQNRRKSPDTMKKYHNNLNDSKYRSYKYENNNREKRRRIS 120

Query: 177 R--STRRRRPRSR 187
           R  S  R R RSR
Sbjct: 121 RYPSIDRSRDRSR 133

ref|YP_045245.1| putative RNA-binding protein [Acinetobacter sp. ADP1]
emb|CAG67423.1| putative RNA-binding protein [Acinetobacter sp. ADP1]
(86 aa)

Score: 45 bits (105), Expect: 0.00113267
Length: 81, Idn/Pos/Gap = 24/45/0 (29%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           ++VRN+     +++LLELF+P+G V    +  D++  + +GF FV +    +A  AI  L
Sbjct:   3 ILVRNLERSVTEQELLELFQPFGQVASCTLVLDQKTGKSKGFGFVEMPHAREAIKAIKGL  62

Query: 131 DGSTMRERIIAVKRAEYERGE 151
           +   ++   I VK A+ +  +
Sbjct:  63 NTFKVKGAGIRVKAADEQNNQ  83

dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
(166 aa)

Score: 45 bits (105), Expect: 0.00118092
Length: 75, Idn/Pos/Gap = 25/45/0 (33%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T +++L ++F  YG + ++ +  DR+ +R RGF FV  +  E A+ A+ A+
Sbjct:   9 LFVGGLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPEDAKDAMEAM  68

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  69 NGKSVDGRQIRVDQA  83

emb|CAG58051.1| unnamed protein product [Candida glabrata CBS138]
ref|XP_445151.1| unnamed protein product [Candida glabrata]
(861 aa)

Score: 45 bits (105), Expect: 0.00118092
Length: 84, Idn/Pos/Gap = 23/47/0 (27%/55%/0%)

Query:  63 SELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQ 122
           +++Q +  L +RNI + + ++D  +LF PYG++ ++ +  D +    +GFA+V     E+
Sbjct: 319 AKIQKTGRLFLRNILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEE 378

Query: 123 AEAAIAALDGSTMRERIIAVKRAE 146
           A  A   LD    + R++ +  A+
Sbjct: 379 AVQAYIELDKQIFQGRLLHILAAD 402

gb|AAL24108.1| unknown protein [Arabidopsis thaliana]
gb|AAO22811.1| unknown protein [Arabidopsis thaliana]
gb|AAD23688.1| expressed protein [Arabidopsis thaliana]
pir||C84601 hypothetical protein At2g21440 [imported] - Arabidopsis thaliana
ref|NP_565513.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
(1003 aa)

Score: 45 bits (105), Expect: 0.0012008
Length: 75, Idn/Pos/Gap = 27/41/0 (36%/54%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+PF  +  D+  +F   G V D+FIP + +    +GFAFV+    + A  AI   
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKF 392

Query: 131 DGSTMRERIIAVKRA 145
           +G    +R IAV  A
Sbjct: 393 NGHMFGKRPIAVDWA 407

gb|EAA09490.2| ENSANGP00000003826 [Anopheles gambiae str. PEST]
ref|XP_314164.2| ENSANGP00000003826 [Anopheles gambiae str. PEST]
(821 aa)

Score: 45 bits (105), Expect: 0.00121086
Length: 123, Idn/Pos/Gap = 34/59/10 (27%/47%/8%)

Query:  24 SLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQE  83
           S +H A++ P          +QG  + K  R   N  SE+ +  S  L  RN+ +  ++ 
Sbjct: 271 SAAHAAQEKPEA--------KQGK-QAKWERQKANASSEA-ICESGRLFFRNLAYSVQES 320

Query:  84 DLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVK 143
           D+  LF  YG V ++ +P D   R+++GF  V     E A  A   L+G+ ++ R+  + 
Sbjct: 321 DIRTLFEQYGPVAEVDVPIDSNTRKLKGFGTVTFMIPEHAVTAYNELNGTFLQGRMFHIL 380

Query: 144 RAE 146
            A+
Sbjct: 381 PAK 383

gb|EAL63873.1| hypothetical protein DDB0218899 [Dictyostelium discoideum]
(234 aa)

Score: 45 bits (105), Expect: 0.00123123
Length: 126, Idn/Pos/Gap = 38/57/5 (30%/45%/3%)

Query:  65 LQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAE 124
           +  S  + V  + F T +E L ELF   G++  I +  DR  +   GF FV   + E A 
Sbjct:  28 IDKSSTIYVGYLSFYTTEEQLYELFSKCGEIKRIIMGLDRNQKTPCGFCFVEYYSKEDAA  87

Query: 125 AAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRP 184
             I  ++GS + ER+I   R +++ G     Q+     G  GQ R   R+D    R    
Sbjct:  88 DCIKYINGSKLDERLI---RCDWDYGFKEGRQYGRGLSG--GQVRDEYRTDYDPGRGGYG 142

Query: 185 RSRSFE 190
           + R FE
Sbjct: 143 KQRQFE 148

ref|NP_177494.1| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]
pir||A96762 probable RNA-binding glycine-rich protein T9L24.48 [imported] - Arabidopsis thaliana
gb|AAG30979.1| RNA-binding glycine-rich protein, putative [Arabidopsis thaliana]
gb|AAY17418.1| At1g73530 [Arabidopsis thaliana]
(181 aa)

Score: 45 bits (105), Expect: 0.00124155
Length: 76, Idn/Pos/Gap = 25/44/0 (32%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L + F  +G++I + +  D+   R +GFAF+R +T E+A  AI  +
Sbjct:  79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138

Query: 131 DGSTMRERIIAVKRAE 146
            G  +  R+I V+ A+
Sbjct: 139 HGKFLDGRVIFVEEAK 154

gb|AAL25292.1| GH07919p [Drosophila melanogaster]
(238 aa)

Score: 44 bits (104), Expect: 0.00125195
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 157 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 216

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 217 NGYTLGNRVLQV 228

gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
(166 aa)

Score: 44 bits (104), Expect: 0.00126244
Length: 75, Idn/Pos/Gap = 24/43/0 (32%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +  + F T +E L ++F  YG + ++ +  DR+ +R RGF FV  +  + A+ A+ A+
Sbjct:   7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM  66

Query: 131 DGSTMRERIIAVKRA 145
           +G  +  R I V +A
Sbjct:  67 NGKAVDGRQIRVDQA  81

gb|AAM63455.1| unknown [Arabidopsis thaliana]
(152 aa)

Score: 44 bits (104), Expect: 0.00127302
Length: 76, Idn/Pos/Gap = 22/44/0 (28%/57%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           +MVRN+PF T ++ L   F  +G++ ++ +  D  ++R +G+AF++  + + A  AI  +
Sbjct:  42 IMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMQRSKGYAFIQFTSQDDAFLAIETM 101

Query: 131 DGSTMRERIIAVKRAE 146
           D      R+I +  A+
Sbjct: 102 DRRMYNGRMIYIDIAK 117

gb|AAS45603.1| sex-lethal [Bradysia coprophila]
(289 aa)

Score: 44 bits (104), Expect: 0.00127302
Length: 73, Idn/Pos/Gap = 28/42/1 (38%/57%/1%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RP+  EL+ +  L V N+P    +E L E+F  YG ++   I  D+   + RG AF+R  
Sbjct: 152 RPAGEELKET-NLYVTNLPRTITEEQLDEIFGKYGLIVQKNILRDKMTGKPRGVAFIRYN 210

Query: 119 TLEQAEAAIAALD 131
             E+A+ AIAAL+
Sbjct: 211 KREEAQEAIAALN 223

emb|CAH95915.1| Ser/Arg-rich splicing factor, putative [Plasmodium berghei]
(297 aa)

Score: 44 bits (104), Expect: 0.00128368
Length: 132, Idn/Pos/Gap = 35/61/2 (26%/46%/1%)

Query:  60 PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQT 119
           P  S+    + L++R + F T    + + F+ +G + D+++P D   +  RGF FV    
Sbjct:   3 PHSSQRPQPMSLLIRKLKFNTSPSMVRDKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYD  62

Query: 120 LEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRST 179
            + AE A+  ++GS +    I V  A+  R +  + ++     G     R  + SD R  
Sbjct:  63 PKDAEQALKEMNGSELDGNRIEVFVAQKGRSDPRIMRYKERGGGSGYGHR--KYSDNRLK 120

Query: 180 RRRRPRSRSFEG 191
           RR   +S S  G
Sbjct: 121 RRYISKSNSRYG 132

gb|AAP42139.1| RNA-binding protein UBP-1 [Trypanosoma cruzi]
gb|AAK53819.1| RNA-binding protein UBP1 [Trypanosoma cruzi]
(224 aa)

Score: 44 bits (104), Expect: 0.00129444
Length: 91, Idn/Pos/Gap = 31/46/3 (34%/50%/3%)

Query:  55 PFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAF 114
           P    P    L+N   LMV  IP    +  L +LF  YG +  + I  DR+ R+ RG+ F
Sbjct:  32 PTQMNPEPDVLRN---LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGF  88

Query: 115 VRLQTLEQAEAAIAALDGSTMRERIIAVKRA 145
           V+ Q+   A+ AIA L+G  +  + + V  A
Sbjct:  89 VKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119

emb|CAE72867.1| Hypothetical protein CBG20166 [Caenorhabditis briggsae]
(418 aa)

Score: 44 bits (104), Expect: 0.00131622
Length: 75, Idn/Pos/Gap = 29/41/2 (38%/54%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V NIPF  R+ DL  +F  YG V+D+ I ++   R  +GF FV +Q  E A+ A   +
Sbjct:  99 LHVSNIPFKYREPDLQTMFEKYGTVVDVEIIFNE--RGSKGFGFVTMQNPEDADRARNEI 156

Query: 131 DGSTMRERIIAVKRA 145
            GS +  R + V  A
Sbjct: 157 HGSIIEGRRVEVNMA 171

emb|CAH94054.1| splicing factor, putative [Plasmodium berghei]
(535 aa)

Score: 44 bits (104), Expect: 0.00131622
Length: 96, Idn/Pos/Gap = 27/52/1 (28%/54%/1%)

Query:  51 KSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           K+++  P  P++  L+  +G ++  +   T QE L +LF P+GD++D+ I  D    + +
Sbjct: 240 KATKHHPIDPNDIPLKLYIGGLLGPLSNITEQE-LKQLFNPFGDILDVEIHRDPYTGKSK 298

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           GF F++     +A  A+  ++G  +  R I V  A+
Sbjct: 299 GFGFIQFHKASEAIEAMTVMNGMEVAGREIKVSYAQ 334

emb|CAH00819.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
ref|XP_453723.1| unnamed protein product [Kluyveromyces lactis]
(878 aa)

Score: 44 bits (104), Expect: 0.00131622
Length: 99, Idn/Pos/Gap = 24/53/0 (24%/53%/0%)

Query:  51 KSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           ++S+      S  +++ +  L +RNI +   ++D  +LF PYG++ ++ I  D +  + +
Sbjct: 312 ETSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSK 371

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
           GFA+V  +  + A  A   LD    + R++ +  A+ ++
Sbjct: 372 GFAYVLFKNADNAATAFVELDKQIFQGRLLHILPADAKK 410

gb|EAA13895.3| ENSANGP00000005999 [Anopheles gambiae str. PEST]
ref|XP_319085.2| ENSANGP00000005999 [Anopheles gambiae str. PEST]
(358 aa)

Score: 44 bits (104), Expect: 0.00132725
Length: 72, Idn/Pos/Gap = 23/40/0 (31%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   ++A  AI +L
Sbjct: 277 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAIQSL 336

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 337 NGYTLGNRVLQV 348

gb|AAN41395.1| putative arginine/serine-rich splicing factor [Arabidopsis thaliana]
gb|AAL38713.1| putative arginine/serine-rich splicing factor [Arabidopsis thaliana]
gb|AAD20171.1| putative arginine/serine-rich splicing factor [Arabidopsis thaliana]
ref|NP_182184.1| arginine/serine-rich splicing factor, putative [Arabidopsis thaliana]
pir||A84905 probable arginine/serine-rich splicing factor [imported] - Arabidopsis thaliana
(250 aa)

Score: 44 bits (104), Expect: 0.00133837
Length: 115, Idn/Pos/Gap = 36/56/9 (31%/48%/7%)

Query:  77 PFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMR 136
           P  TR+ D+   F PYG V+++        R  R FAFV+  T E A  A+ +   S + 
Sbjct: 104 PIRTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLL 155

Query: 137 ERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRPRSRSFEG 191
           +++++V+ A  E GE    ++AG+   R       RR     TRRR P    ++G
Sbjct: 156 DKVVSVEYALREAGERE-DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKG 209

ref|XP_417784.1| PREDICTED: similar to PTB-associated splicing factor [Gallus gallus]
(397 aa)

Score: 44 bits (104), Expect: 0.00134958
Length: 102, Idn/Pos/Gap = 33/49/6 (32%/48%/5%)

Query:  46 GAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQ 105
            AA  K++     RP E        L V N+P     ED   LF  YG+  ++FI     
Sbjct:   3 AAAGFKANLSLLRRPGEKTYTQRCRLFVGNLPADITDEDFKRLFAKYGEPGEVFI-----  57

Query: 106 LRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEY 147
             + +GF F++L++   AE A A LD + MR R + V+ A +
Sbjct:  58 -NKGKGFGFIKLESRALAEIAKAELDDTPMRGRQLRVRFATH  98

gb|AAK15561.1| putative nucleic acid-binding protein [Arabidopsis thaliana]
gb|AAM65687.1| nucleic acid-binding protein, putative [Arabidopsis thaliana]
ref|NP_176208.1| 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana]
gb|AAD14476.1| Strong similarity to gb|X82030 chloroplast RNA binding protein (RNP1) from Phaseolus vulgaris. [Arabidopsis thaliana]
pir||C96624 hypothetical protein T2K10.5 [imported] - Arabidopsis thaliana
(258 aa)

Score: 44 bits (104), Expect: 0.00134958
Length: 96, Idn/Pos/Gap = 30/47/3 (31%/48%/3%)

Query:  52 SSRPFPNR-PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           + +P PN+ P   E ++   L V N+ +    E L   FR  GDV+   + +D    R R
Sbjct: 161 ADKPKPNKEPLYPETEHK--LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSR 218

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           G+ FV   +  + E A+ +LDG  +  R I V  A+
Sbjct: 219 GYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254

gb|AAC47624.1| putative RNA binding protein [Brugia malayi]
(82 aa)

Score: 44 bits (104), Expect: 0.00136089
Length: 78, Idn/Pos/Gap = 26/39/0 (33%/50%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  + V N+P+  R+ED+   F   G V  + I  DR   R RGF F   +T   AE A+
Sbjct:   2 SRSVFVGNLPYSAREEDVANFFWQVGPVTSVRIVLDRDTGRPRGFGFCEFETEAAAEQAV  61

Query: 128 AALDGSTMRERIIAVKRA 145
            +++ +    R + V RA
Sbjct:  62 GSMNHAEFMGRQLRVDRA  79

gb|AAO19468.1| sex-lethal [Sciara ocellaris]
(287 aa)

Score: 44 bits (104), Expect: 0.00137229
Length: 73, Idn/Pos/Gap = 28/42/1 (38%/57%/1%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RP+  EL+ +  L V N+P    +E L E+F  YG ++   I  D+   + RG AF+R  
Sbjct: 150 RPAGEELKET-NLYVTNLPRTITEEQLDEIFGKYGLIVQKNILRDKMTGKPRGVAFIRYN 208

Query: 119 TLEQAEAAIAALD 131
             E+A+ AIAAL+
Sbjct: 209 KREEAQEAIAALN 221

gb|AAS45604.1| sex-lethal [Rhynchosciara americana]
(293 aa)

Score: 44 bits (104), Expect: 0.00138379
Length: 73, Idn/Pos/Gap = 28/42/1 (38%/57%/1%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RP+  EL+ +  L V N+P    +E L E+F  YG ++   I  D+   + RG AF+R  
Sbjct: 156 RPAGEELKET-NLYVTNLPRTITEEQLDEIFGKYGLIVQKNILRDKMTGKPRGVAFIRYN 214

Query: 119 TLEQAEAAIAALD 131
             E+A+ AIAAL+
Sbjct: 215 KREEAQEAIAALN 227

ref|YP_000459.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]
ref|NP_713938.1| RNA-binding protein [Leptospira interrogans serovar Lai str. 56601]
gb|AAN50956.1| RNA-binding protein [Leptospira interrogans serovar lai str. 56601]
gb|AAS69096.1| RNA-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130]
(86 aa)

Score: 44 bits (104), Expect: 0.00140708
Length: 79, Idn/Pos/Gap = 26/42/0 (32%/53%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           SV + V N+ +   +  L +LFR +G V  + I  D+   + +GF FV +   E+A+ AI
Sbjct:   2 SVNIYVGNLSYDLNEGTLGDLFRAHGTVNSVKIIMDQYSGKSKGFGFVEMPNKEEADKAI  61

Query: 128 AALDGSTMRERIIAVKRAE 146
             LDG  +  R + V  A+
Sbjct:  62 KDLDGKNVLTRNLKVNVAK  80

ref|NP_995882.1| CG5119-PH, isoform H [Drosophila melanogaster]
ref|NP_725752.1| CG5119-PE, isoform E [Drosophila melanogaster]
ref|NP_725750.1| CG5119-PC, isoform C [Drosophila melanogaster]
ref|NP_725754.1| CG5119-PG, isoform G [Drosophila melanogaster]
ref|NP_725751.1| CG5119-PD, isoform D [Drosophila melanogaster]
ref|NP_725749.1| CG5119-PB, isoform B [Drosophila melanogaster]
ref|NP_725753.1| CG5119-PF, isoform F [Drosophila melanogaster]
ref|NP_476667.1| CG5119-PA, isoform A [Drosophila melanogaster]
gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gb|AAS64811.1| CG5119-PH, isoform H [Drosophila melanogaster]
gb|AAM68178.1| CG5119-PG, isoform G [Drosophila melanogaster]
gb|AAF57747.1| CG5119-PF, isoform F [Drosophila melanogaster]
gb|AAM68177.1| CG5119-PE, isoform E [Drosophila melanogaster]
gb|AAM68176.1| CG5119-PD, isoform D [Drosophila melanogaster]
gb|AAF57746.1| CG5119-PC, isoform C [Drosophila melanogaster]
gb|AAF57745.1| CG5119-PB, isoform B [Drosophila melanogaster]
gb|AAM68175.1| CG5119-PA, isoform A [Drosophila melanogaster]
(634 aa)

Score: 44 bits (104), Expect: 0.00144274
Length: 126, Idn/Pos/Gap = 39/58/13 (30%/46%/10%)

Query:  26 SHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQNSVGLM----VRNIPFGTR  81
           ++T+ D  +G  L G+    G   P+  R       E EL     L     V+N      
Sbjct: 143 ANTSIDKVNGMLLNGKKVYVGKFIPRKER-------EKELGEKAKLFTNVYVKNFTEDFD 195

Query:  82 QEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRE-RII 140
            E L E F PYG +    +   ++  + +GF FV  +T E AEAA+ AL+G  M E + +
Sbjct: 196 DEKLKEFFEPYGKITSYKV-MSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSL 254

Query: 141 AVKRAE 146
            V RA+
Sbjct: 255 YVARAQ 260

gb|AAB22809.1| NSR1=nucleolin homolog [Saccharomyces cerevisiae, Peptide, 249 aa]
(249 aa)

Score: 44 bits (104), Expect: 0.00145483
Length: 97, Idn/Pos/Gap = 27/50/4 (27%/51%/4%)

Query:  42 TTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIP 101
           +T + A     ++ F + PSE     S  L + N+ F   ++ + ELF  +G+V+ + IP
Sbjct:  79 STSKPAGNNDRAKKFGDTPSEP----SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIP 134

Query: 102 WDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRER 138
              +  + +GF +V+   +E A+ A+ AL G  +  R
Sbjct: 135 THPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 171

gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic construct]
gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
(173 aa)

Score: 44 bits (104), Expect: 0.00150421
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

emb|CAA85276.1| Hypothetical protein R74.5a [Caenorhabditis elegans]
ref|NP_497841.1| RNA-binding region RNP-1 (43.8 kD) (3F291) [Caenorhabditis elegans]
pir||T24255 hypothetical protein R74.5 - Caenorhabditis elegans
(404 aa)

Score: 44 bits (104), Expect: 0.00152952
Length: 75, Idn/Pos/Gap = 28/42/2 (37%/56%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V NIPF  R+ DL  +F   G V+D+ I ++   R  +GF FV +Q  + A+ A A  
Sbjct: 102 LHVSNIPFKYREPDLTAMFEKVGPVVDVEIIFNE--RGSKGFGFVTMQNPDDADRARAEF 159

Query: 131 DGSTMRERIIAVKRA 145
           +G+T+  R + V  A
Sbjct: 160 NGTTIEGRRVEVNLA 174

gb|EAA01735.2| ENSANGP00000020835 [Anopheles gambiae str. PEST]
ref|XP_321180.2| ENSANGP00000020835 [Anopheles gambiae str. PEST]
(312 aa)

Score: 44 bits (104), Expect: 0.00152952
Length: 76, Idn/Pos/Gap = 27/41/1 (35%/53%/1%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RPS SE      L +  +P    QE+L  +FRPYG++I   +       + +G  F+R  
Sbjct:  74 RPS-SEGIKGANLYISGLPKTITQEELETIFRPYGEIITSRVLIQDGNDKPKGVGFIRFD 132

Query: 119 TLEQAEAAIAALDGST 134
             ++AE AI AL+G+T
Sbjct: 133 QRKEAERAIQALNGTT 148


Score: 41 bits (97), Expect: 0.00942995
Length: 72, Idn/Pos/Gap = 21/41/0 (29%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + N+   T +  L +LF P+G V ++ +  D    + +G+ FV +   E+A  AI +L
Sbjct: 233 IFIYNLAPETEENTLWQLFGPFGAVQNVKVIKDAATNQCKGYGFVTMTNYEEAMLAIRSL 292

Query: 131 DGSTMRERIIAV 142
           +G T+ +R++ V
Sbjct: 293 NGYTLGQRVLQV 304

emb|CAA49174.1| glycine-rich RNA-binding protein [Arabidopsis thaliana]
(139 aa)

Score: 44 bits (104), Expect: 0.00156829
Length: 78, Idn/Pos/Gap = 28/39/0 (35%/50%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           S  L +  + +GT    L + F  +GDV+D  +  DR+  R RGF FV       A AAI
Sbjct:  15 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI  74

Query: 128 AALDGSTMRERIIAVKRA 145
           + +DG  +  R I V  A
Sbjct:  75 SEMDGKELNGRHIRVNPA  92

gb|AAP52936.1| putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
ref|NP_920649.1| putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
gb|AAN04953.1| Putative RNA-binding protein [Oryza sativa (japonica cultivar-group)]
(147 aa)

Score: 44 bits (104), Expect: 0.00156829
Length: 57, Idn/Pos/Gap = 24/33/0 (42%/57%/0%)

Query:  76 IPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           I +GT  + L E F  YG+VI+  +  DR   R RGF FV   + ++A AAI  +DG
Sbjct:  68 ISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAITGMDG 124

gb|EAA60707.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
ref|XP_408802.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
(279 aa)

Score: 44 bits (104), Expect: 0.00156829
Length: 140, Idn/Pos/Gap = 31/67/9 (22%/47%/6%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           P     ++ +++  + +  +PF   + D++ +F  YG+ + I +  D++  + RGFAF++
Sbjct:  21 PEASWHADYRDTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLK  80

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGE-----GPVSQHAGASDGRRGQSRRP 171
            +     + A+  L G+T+  R++ V    Y++ +       V++  G + G+       
Sbjct:  81 YEDQRSTDLAVDNLGGATVLGRVLRVDHTRYKKRDEDEDTNNVAKLLGETAGKEADGDTD 140

Query: 172 ----RRSDGRSTRRRRPRSR 187
               RR  G S  R +PR +
Sbjct: 141 DEGRRRKRGHSGERDQPRRQ 160

gb|AAH48159.1| Elavl4 protein [Mus musculus]
(412 aa)

Score: 44 bits (104), Expect: 0.00159468
Length: 95, Idn/Pos/Gap = 25/48/0 (26%/50%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   + +  L +LF P+G V ++ +  D    + +GF FV +   ++A  AIA+L
Sbjct: 304 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 363

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRR 165
           +G  + +R++ V    Y+     ++   G   G R
Sbjct: 364 NGYRLGDRVLQVSMTNYDEAAMAIASLNGYRLGDR 398

gb|AAT07459.1| cap-binding protein [Mirabilis jalapa]
(147 aa)

Score: 44 bits (103), Expect: 0.0016488
Length: 142, Idn/Pos/Gap = 41/65/10 (28%/45%/7%)

Query:  36 ATLIGETTEQGAAKPKSSRPFPNRPSESE--LQNSVGLMVRNIPFGTRQEDLLELFRPYG  93
           A+L  + T+  A +    R FP    E E  L+ S  L + N+ F T +E + ELF   G
Sbjct:   2 ASLFKDATKISAYR---DRRFPGNQEEFEEALKKSTTLYIGNMSFYTTEEQVYELFSRVG  58

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGP 153
           ++  I +  D+  +   GF FV   + E  E A+  + G+ + +R I   R +++ G   
Sbjct:  59 EIKKITMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPI---RVDFDWGFQE 115

Query: 154 VSQHAGASDGRRGQSRRPRRSD 175
             Q      G  GQ R   R+D
Sbjct: 116 GRQWGRGRSG--GQVRDEYRTD 135

ref|NP_599126.1| CG3151-PF, isoform F [Drosophila melanogaster]
ref|NP_001014462.1| CG3151-PG, isoform G [Drosophila melanogaster]
ref|NP_599125.1| CG3151-PE, isoform E [Drosophila melanogaster]
gb|AAX52651.1| CG3151-PG, isoform G [Drosophila melanogaster]
gb|AAN10403.1| CG3151-PF, isoform F [Drosophila melanogaster]
gb|AAN10402.1| CG3151-PE, isoform E [Drosophila melanogaster]
gb|AAC13646.1| RNA-binding protein
gb|AAR88559.1| GH26440p [Drosophila melanogaster]
(439 aa)

Score: 44 bits (103), Expect: 0.0016488
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 358 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 417

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 418 NGYTLGNRVLQV 429

gb|AAX70104.1| RNA-binding protein, putative [Trypanosoma brucei]
(386 aa)

Score: 44 bits (103), Expect: 0.00167654
Length: 106, Idn/Pos/Gap = 31/53/4 (29%/50%/3%)

Query:  55 PFPNRP----SESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           PF   P    + +E Q+   L+VRN+     +  L ++F PYG+++   +  +       
Sbjct:  29 PFVKLPESKLTPNECQSKTNLIVRNLSNRVDEAVLKQIFSPYGEILSAAVMRNIHTGDSL  88

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQ 156
           G AFVR  T EQA AA+    G  +  R+++V+ A+ +    PV +
Sbjct:  89 GTAFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGE 134

ref|XP_533961.1| PREDICTED: similar to cold inducible RNA binding protein [Canis familiaris]
(172 aa)

Score: 44 bits (103), Expect: 0.00169059
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

ref|NP_599127.1| CG3151-PC, isoform C [Drosophila melanogaster]
ref|NP_599124.1| CG3151-PB, isoform B [Drosophila melanogaster]
gb|AAF51178.2| CG3151-PC, isoform C [Drosophila melanogaster]
gb|AAF51177.2| CG3151-PB, isoform B [Drosophila melanogaster]
gb|AAC13645.1| RNA-binding protein
(444 aa)

Score: 44 bits (103), Expect: 0.00171904
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 423 NGYTLGNRVLQV 434

emb|CAH84192.1| Ser/Arg-rich splicing factor, putative [Plasmodium chabaudi]
(129 aa)

Score: 44 bits (103), Expect: 0.00176261
Length: 98, Idn/Pos/Gap = 26/48/0 (26%/48%/0%)

Query:  60 PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQT 119
           P   +    + L++R + F T    + E F+ +G + D+++P D   +  RGF FV    
Sbjct:   3 PHSGQKPQPMSLLIRKLKFNTSPSMVREKFKKFGAIKDVYLPIDYYTKEPRGFGFVEFYD  62

Query: 120 LEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQH 157
            + AE A+  ++GS +    I V  A+  R +  V ++
Sbjct:  63 PKDAEEALKEMNGSEIDGNRIEVFVAQKGRSDPRVMRY 100

emb|CAA97173.1| NSR1 [Saccharomyces cerevisiae]
emb|CAA59817.1| NSR1 [Saccharomyces cerevisiae]
emb|CAA40472.1| nuclear localization sequence binding protein [Saccharomyces cerevisiae]
sp|P27476|NSR1_YEAST Nuclear localization sequence binding protein (P67)
ref|NP_011675.1| Nsr1p [Saccharomyces cerevisiae]
(414 aa)

Score: 44 bits (103), Expect: 0.00177738
Length: 97, Idn/Pos/Gap = 27/50/4 (27%/51%/4%)

Query:  42 TTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIP 101
           +T + A     ++ F + PSE     S  L + N+ F   ++ + ELF  +G+V+ + IP
Sbjct: 244 STSKPAGNNDRAKKFGDTPSEP----SDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIP 299

Query: 102 WDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRER 138
              +  + +GF +V+   +E A+ A+ AL G  +  R
Sbjct: 300 THPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNR 336

emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
(206 aa)

Score: 44 bits (103), Expect: 0.00182243
Length: 75, Idn/Pos/Gap = 28/40/0 (37%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ F   +E+L   F  YG+V  + I  DR+  R RGFAFV +   E A+ AI  L
Sbjct:  68 IYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIENL 127

Query: 131 DGSTMRERIIAVKRA 145
           +G  +  R + V  A
Sbjct: 128 NGHEIDGRSVTVNEA 142

gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
emb|CAH89574.1| hypothetical protein [Pongo pygmaeus]
gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gb|AAC04895.1| CIRP [Homo sapiens]
dbj|BAA11212.1| CIRP [Homo sapiens]
ref|NP_001271.1| cold inducible RNA binding protein [Homo sapiens]
(172 aa)

Score: 44 bits (103), Expect: 0.0018377
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

gb|AAB25519.2| RRM9 [Drosophila melanogaster]
(444 aa)

Score: 44 bits (103), Expect: 0.0018531
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 422

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 423 NGYTLGNRVLQV 434

gb|AAH57481.1| Cirbp protein [Danio rerio]
(121 aa)

Score: 44 bits (103), Expect: 0.00186863
Length: 74, Idn/Pos/Gap = 25/40/0 (33%/54%/0%)

Query:  72 MVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALD 131
           M   + + T ++ L E F  YG +  + +  DR+  R RGF FV  +  E A+ A+AA++
Sbjct:   1 MFGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMN  60

Query: 132 GSTMRERIIAVKRA 145
           G  +  R+I V  A
Sbjct:  61 GKQVDGRMIRVDEA  74

gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
ref|NP_031731.1| cold inducible RNA binding protein [Mus musculus]
gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein (Glycine-rich RNA-binding protein CIRP) (A18 hnRNP)
dbj|BAA11213.1| CIRP [Mus musculus]
dbj|BAA19092.1| CIRP [Rattus norvegicus]
dbj|BAB29491.1| unnamed protein product [Mus musculus]
(172 aa)

Score: 44 bits (103), Expect: 0.00186863
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

emb|CAH80683.1| hypothetical protein PC000170.04.0 [Plasmodium chabaudi]
(134 aa)

Score: 44 bits (103), Expect: 0.00188428
Length: 52, Idn/Pos/Gap = 20/34/0 (38%/65%/0%)

Query:  81 RQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           +Q DL++ F P+G+++   I  ++   R RGFAFV  + +E A AAI+ ++G
Sbjct:   5 QQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYENIESAAAAISQMNG  56

gb|EAK90144.1| RRM domain containing protein; T22E16.120 Sc35-like splicing factor [Cryptosporidium parvum]
(344 aa)

Score: 44 bits (103), Expect: 0.00190007
Length: 130, Idn/Pos/Gap = 37/54/7 (28%/41%/5%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++R++ F T    +   F  +G + D+++P D + RR RGF FV     E A AA+  +
Sbjct:  29 LLIRSLRFDTPTSLVRREFERFGAIRDVYLPLDYRSRRPRGFGFVEYVEEEDARAALEKM  88

Query: 131 DGSTMRERIIAV-------KRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRR 183
           DG+T+    I V       K  E  R     S H        G    P         RR 
Sbjct:  89 DGATLDGVTINVTFAQEGRKSPESMRHREYESFHGNGGRHLSGHRYGPHNHYKSDPYRRY 148

Query: 184 PRSRSFEGGN 193
           P  R +  G+
Sbjct: 149 PSPRDYREGS 158

gb|AAW40908.1| transformer-2-beta isoform 3, putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_566727.1| transformer-2-beta isoform 3, putative [Cryptococcus neoformans var. neoformans JEC21]
(277 aa)

Score: 44 bits (103), Expect: 0.00190007
Length: 106, Idn/Pos/Gap = 30/54/6 (28%/50%/5%)

Query:  48 AKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           + P+SS  F ++   + +    GL VR     T + DL + F  +G++  + I +D++  
Sbjct: 110 SPPRSSHVF-SKVKSTNILGVFGLSVR-----TTERDLQDEFSRHGEIEKVVIVYDQRTG 163

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGP 153
           R RGF F+ ++++E A   I  L+G T+  R I V  +   +   P
Sbjct: 164 RSRGFGFITMRSIEDATQCINKLNGFTIHGRNIRVDYSATPKPHDP 209

gb|EAL21969.1| hypothetical protein CNBC1090 [Cryptococcus neoformans var. neoformans B-3501A]
gb|AAW42566.1| rRNA primary transcript binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
ref|XP_569873.1| rRNA primary transcript binding protein, putative [Cryptococcus neoformans var. neoformans JEC21]
(769 aa)

Score: 44 bits (103), Expect: 0.00193204
Length: 123, Idn/Pos/Gap = 34/55/0 (27%/44%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L VRN+ F T  E L   F  YG + +  +P  +      G AF++    E A AA  AL
Sbjct: 223 LFVRNLAFITTSESLSSHFSTYGRIDECHLPVSQTTGEPLGTAFLQFHNAEDALAAYKAL 282

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRPRSRSFE 190
           D +  + R++ V     + G+   +  +G  DG+    R   R + +S    + +  S +
Sbjct: 283 DKTIFQGRLLHVLPGRAKPGQEGAAAGSGVVDGKVLGKRDEGRGEVKSKVDAKRKQESAK 342

Query: 191 GGN 193
           G N
Sbjct: 343 GVN 345

gb|AAS51955.1| ADR035Cp [Ashbya gossypii ATCC 10895]
ref|NP_984131.1| ADR035Cp [Eremothecium gossypii]
(838 aa)

Score: 44 bits (103), Expect: 0.00198102
Length: 79, Idn/Pos/Gap = 23/44/0 (29%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RNI +   +ED  +LF PYG++ ++ +  D +  + +GFA+V  +  E A  A   L
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362

Query: 131 DGSTMRERIIAVKRAEYER 149
           D    + R++ +  A+ ++
Sbjct: 363 DKQIFQGRLLHILPADAKK 381


Score: 42 bits (98), Expect: 0.00765453
Length: 76, Idn/Pos/Gap = 25/42/1 (32%/55%/1%)

Query:  73 VRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDG 132
           V+N+PF   ++D+ ELF  +G +  + +P  +  +  RGFAFV      +AE A+  L G
Sbjct: 716 VKNLPFEATRKDVFELFSSFGQLKSVRVP-KKFDKSARGFAFVEFLLPSEAENAMDQLQG 774

Query: 133 STMRERIIAVKRAEYE 148
             +  R + ++ AE E
Sbjct: 775 VHLLGRRLVMQYAEQE 790

emb|CAB56042.1| glycine rich RNA binding protein [Ciona intestinalis]
(162 aa)

Score: 44 bits (103), Expect: 0.00199761
Length: 79, Idn/Pos/Gap = 27/46/0 (34%/58%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+ +   ++DL + F   G V ++ I  DR+  R RGFAFV   +  +A  AI  L
Sbjct:   6 VFVGNLSYNATEDDLRKHFSGSGQVEEVAIICDRETGRSRGFAFVTFSSEGEANDAIENL  65

Query: 131 DGSTMRERIIAVKRAEYER 149
           + S +R R ++V++A+ +R
Sbjct:  66 NESDVRGRNVSVRQAQSKR  84

emb|CAD26357.1| POLYADENYLATE BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
ref|NP_597181.1| POLYADENYLATE BINDING PROTEIN 2 [Encephalitozoon cuniculi GB-M1]
(432 aa)

Score: 44 bits (103), Expect: 0.00203123
Length: 100, Idn/Pos/Gap = 32/56/5 (32%/56%/5%)

Query:  50 PKSSRPFPNR--PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLR 107
           P+S+   P++  P E+  Q    L++RN+PF   +E++ ++F  +  V+D+ IP  R+  
Sbjct: 334 PESTGEEPSKRPPEEASGQLMNKLLIRNVPFQASKEEIRKIFGSF-HVVDVRIPVKREGS 392

Query: 108 RIRGFAFVRLQTLEQAEAAIAALDGST-MRERIIAVKRAE 146
             RGF FV L + +   AAI     ST +  R + ++RA+
Sbjct: 393 S-RGFCFVTLNSPDDVTAAIEHFGSSTHLYGRRLVLERAK 431

ref|NP_973702.1| arginine/serine-rich splicing factor, putative [Arabidopsis thaliana]
(224 aa)

Score: 44 bits (103), Expect: 0.00204825
Length: 115, Idn/Pos/Gap = 36/56/9 (31%/48%/7%)

Query:  77 PFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMR 136
           P  TR+ D+   F PYG V+++        R  R FAFV+  T E A  A+ +   S + 
Sbjct:  78 PIRTRERDMERHFEPYGKVLNV--------RMRRNFAFVQFATQEDATKALDSTHNSKLL 129

Query: 137 ERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRPRSRSFEG 191
           +++++V+ A  E GE    ++AG+   R       RR     TRRR P    ++G
Sbjct: 130 DKVVSVEYALREAGERE-DRYAGSRRRRSPSPVYRRRPSPDYTRRRSPEYDRYKG 183

gb|AAL39067.1| single-stranded DNA binding protein precursor [Solanum tuberosum]
(289 aa)

Score: 44 bits (103), Expect: 0.00208271
Length: 107, Idn/Pos/Gap = 34/49/6 (31%/45%/5%)

Query:  46 GAAKPKSSRPFPNRPSES------ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIF  99
           G A PK    F +  S         + +S  + V N+ +   Q+ L  LF   G V+D  
Sbjct: 175 GPAPPKRENSFGDNSSYQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAK 234

Query: 100 IPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           + +DR   R RGF FV   + ++   AI +LDG  +  R I V  AE
Sbjct: 235 VVYDRDSGRSRGFGFVTYSSAKEVNDAIESLDGVDLGGRAIRVSPAE 281

ref|XP_532435.1| PREDICTED: similar to RNA binding motif protein 28 [Canis familiaris]
(2716 aa)

Score: 44 bits (103), Expect: 0.00210016
Length: 75, Idn/Pos/Gap = 25/47/1 (33%/62%/1%)

Query:   71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL  130
            L++RN+ F   ++DL  +F  YG V+++ IP  +   ++RGFAFV+ + L +A  A+ ++
Sbjct: 2094 LIIRNLSFKCSEDDLKTVFGQYGAVLEVNIP-RKPDGKMRGFAFVQFKNLLEAGKALKSM 2152

Query:  131 DGSTMRERIIAVKRA  145
            +   ++ R +AV  A
Sbjct: 2153 NMKEIKGRTVAVDWA 2167

emb|CAI20525.1| OTTHUMP00000028771 [Homo sapiens]
emb|CAI19059.1| OTTHUMP00000028771 [Homo sapiens]
emb|CAA15842.1| hypothetical protein [Homo sapiens]
ref|NP_055124.1| RNA binding motif protein 9 [Homo sapiens]
(367 aa)

Score: 44 bits (103), Expect: 0.00211776
Length: 126, Idn/Pos/Gap = 37/61/4 (29%/48%/3%)

Query:  22 GDSLSHTAKDSPSGATLIGETTE-QGAAKPKSSRPFPNRPSESELQNSVG-LMVRNIPFG  79
           G + +H  + S S +T  G  T+ +G A+    +        SE +++   L V NIPF 
Sbjct:  63 GSTQAHGEQSSNSPSTQNGSLTQTEGGAQTDGQQSQTQSSENSESKSTPKRLHVSNIPFR 122

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
            R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A   L G+ +  R 
Sbjct: 123 FRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRK 180

Query: 140 IAVKRA 145
           I V  A
Sbjct: 181 IEVNNA 186

dbj|BAA87307.1| Hypothetical protein YPR112c [Schizosaccharomyces pombe]
(160 aa)

Score: 43 bits (102), Expect: 0.0021534
Length: 76, Idn/Pos/Gap = 21/40/0 (27%/52%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +RN+ +   ++DL  LF P+G +  + +P D++    +GFA++     + A  A   L
Sbjct:  22 LFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLEL  81

Query: 131 DGSTMRERIIAVKRAE 146
           D    + R++ V  A+
Sbjct:  82 DAKPFQGRLLHVLPAK  97

gb|AAN63408.1| Hypothetical protein F25B5.7d [Caenorhabditis elegans]
ref|NP_871666.1| RNA-binding region RNP-1 (3H44) [Caenorhabditis elegans]
(374 aa)

Score: 43 bits (102), Expect: 0.00218963
Length: 75, Idn/Pos/Gap = 27/43/7 (36%/57%/9%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P   ++ +L ELF P+GD+ + ++         +GFAF+RL T   AE+A  A+
Sbjct: 118 LFVGNLPNEVKETELKELFSPHGDIAECYLSG-------KGFAFLRLDTRAHAESAKEAI 170

Query: 131 DGSTMRERIIAVKRA 145
           DG  +  R + V+ A
Sbjct: 171 DGRIIHGRQVRVRFA 185

emb|CAH95360.1| conserved hypothetical protein [Plasmodium berghei]
(506 aa)

Score: 43 bits (102), Expect: 0.00220798
Length: 62, Idn/Pos/Gap = 21/35/0 (33%/56%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + + +IP    Q DLL  F P+G++I  +I  ++   R RGFAFV    ++ A  A+  +
Sbjct: 399 IFIFHIPNEWIQNDLLAAFSPFGNIISAYIATEKDTGRNRGFAFVSYDNVDSAINAVKYM 458

Query: 131 DG 132
           +G
Sbjct: 459 NG 460

gb|AAS45605.1| sex-lethal [Trichomegalosphys pubescens]
(292 aa)

Score: 43 bits (102), Expect: 0.00222648
Length: 73, Idn/Pos/Gap = 27/42/1 (36%/57%/1%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           RP+  E++ +  L V N+P    +E L E+F  YG ++   I  D+   + RG AF+R  
Sbjct: 155 RPAGEEIKET-NLYVTNLPRTITEEQLDEIFGKYGLIVQKNILRDKMTGKPRGVAFIRYN 213

Query: 119 TLEQAEAAIAALD 131
             E+A+ AIAAL+
Sbjct: 214 KREEAQEAIAALN 226

ref|NP_112409.2| cold inducible RNA binding protein [Rattus norvegicus]
gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
(172 aa)

Score: 43 bits (102), Expect: 0.00224514
Length: 75, Idn/Pos/Gap = 24/45/0 (32%/60%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V +A
Sbjct:  68 NGKSVDGRQIRVDQA  82

dbj|BAC87434.1| unnamed protein product [Homo sapiens]
(135 aa)

Score: 43 bits (102), Expect: 0.00230204
Length: 71, Idn/Pos/Gap = 22/44/1 (30%/61%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V  + F T ++ L ++F  YG + ++ +  DR+ +R RGF FV  + ++ A+ A+ A+
Sbjct:   8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM  67

Query: 131 DGSTMRERIIA 141
           +G  +R R+++
Sbjct:  68 NGK-VRIRVLS  77

emb|CAH11469.1| hypothetical protein [Legionella pneumophila str. Paris]
ref|YP_122661.1| hypothetical protein lpp0321 [Legionella pneumophila str. Paris]
(91 aa)

Score: 43 bits (102), Expect: 0.00232133
Length: 86, Idn/Pos/Gap = 25/48/9 (29%/55%/10%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI--- 127
           + V N+PFGT +E L   F  YG + ++F+  DR   +++GF F+     ++AE+A+   
Sbjct:   6 IYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESALEMN  65

Query: 128 -AALDGSTMR-----ERIIAVKRAEY 147
               DG +++     ++I +V R+ +
Sbjct:  66 GQPFDGRSLKVCMAQKKINSVSRSRW  91

gb|AAH49051.1| Similar to splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) [Danio rerio]
ref|NP_957491.1| splicing factor, arginine/serine-rich, 10 [Danio rerio]
(278 aa)

Score: 43 bits (102), Expect: 0.00232133
Length: 113, Idn/Pos/Gap = 38/53/8 (33%/46%/7%)

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
           T + DL E+F  YG + D+ I +D+Q RR RGFA V  +  E ++ A    +G  +  R 
Sbjct: 134 TTERDLREVFSKYGPLSDVCIVYDQQSRRSRGFALVYFENREDSKEAKERANGMELDGRR 193

Query: 140 IAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRPRSRSFEGG 192
           I   R +Y   +GP +   G   GR      P  S     RRR    R +E G
Sbjct: 194 I---RVDYSITKGPHTPTPGIYMGRPTYGGGPSVS-----RRRDSYDRGYERG 238

ref|YP_074838.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
dbj|BAD39994.1| glycine-rich RNA-binding protein [Symbiobacterium thermophilum IAM 14863]
(86 aa)

Score: 43 bits (102), Expect: 0.00234078
Length: 78, Idn/Pos/Gap = 33/44/1 (42%/56%/1%)

Query:  69 VGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIA 128
           V + V N+P+ T  E+L  LF PYG+V    I  DR+ RR RGF FV +   E A  AI 
Sbjct:   4 VSIFVGNLPWATTDEELEALFAPYGEVKRSKIVLDRETRRSRGFGFVDM-EEEAAAGAIE  62

Query: 129 ALDGSTMRERIIAVKRAE 146
           AL+G     R++ V  A+
Sbjct:  63 ALNGQPYNGRVLTVNLAQ  80

emb|CAF96201.1| unnamed protein product [Tetraodon nigroviridis]
(565 aa)

Score: 43 bits (102), Expect: 0.00238017
Length: 79, Idn/Pos/Gap = 29/41/8 (36%/51%/10%)

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
           N+V + V N+   T QE+L  +F PYG V+   +        +R FAFV LQ    AE A
Sbjct:   5 NTVKIFVGNLALDTTQEELSCIFEPYGQVVSCSV--------LRQFAFVHLQGEGSAERA  56

Query: 127 IAALDGSTMRERIIAVKRA 145
           I  L+G   R R + V+ +
Sbjct:  57 IRELNGREFRGRNLVVEES  75

gb|EAA11513.2| ENSANGP00000013045 [Anopheles gambiae str. PEST]
ref|XP_316392.2| ENSANGP00000013045 [Anopheles gambiae str. PEST]
(163 aa)

Score: 43 bits (102), Expect: 0.00238017
Length: 92, Idn/Pos/Gap = 30/50/5 (32%/54%/5%)

Query:  51 KSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           + + P P R  E  +     L V  I    +++D+ E F  +GD+ +I +  DR+   ++
Sbjct:  58 EEAEPGPQRSVEGWI-----LFVTAIHEEAQEDDIQEKFCEFGDIKNIHLNLDRRTGFLK 112

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAV 142
           G+A V  +T +QA AA  AL+GS +  + IAV
Sbjct: 113 GYALVEYETYKQALAAKEALNGSEVLGQTIAV 144

ref|XP_590441.1| PREDICTED: similar to 54 kDa nuclear RNA- and DNA-binding protein (p54(nrb)) (p54nrb) (55 kDa nuclear protein) (NMT55) (Non-POU domain-containing octamer-binding protein) (DNA-binding P52/P100 complex, 52 kDa subunit), partial [Bos taurus]
(655 aa)

Score: 43 bits (102), Expect: 0.00246095
Length: 87, Idn/Pos/Gap = 28/43/6 (32%/49%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +E++ +LF  YG   ++FI  D      +GF F+RL+
Sbjct:  12 KPGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLE  65

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRA 145
           T   AE A   LD   +R + + V+ A
Sbjct:  66 TRTLAEIAKVELDNMPLRGKQLRVRFA  92

ref|ZP_00301292.1| COG0724: RNA-binding proteins (RRM domain) [Geobacter metallireducens GS-15]
(134 aa)

Score: 43 bits (102), Expect: 0.00248157
Length: 79, Idn/Pos/Gap = 25/43/0 (31%/54%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V ++ +   ++DL  LF   G V  + +  DR     +G  +VR+ T+E+A+ A+  L
Sbjct:   7 LYVGHMSYEATEDDLRRLFTVAGTVTSVHLITDRDTGEFKGCGYVRMATIEEAKEAVETL  66

Query: 131 DGSTMRERIIAVKRAEYER 149
           DG+ +R R I V  A  ++
Sbjct:  67 DGALLRNRAITVTLARPQK  85

gb|AAT77901.1| putative RNA binding motif protein [Oryza sativa (japonica cultivar-group)]
(197 aa)

Score: 43 bits (102), Expect: 0.00254447
Length: 103, Idn/Pos/Gap = 26/50/3 (25%/48%/2%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L+V  +     ++DL   F  +G V D+ +  +R+    +G+A V  ++ E+A+ AI A+
Sbjct:  92 LLVSGVKEDAEEDDLYNTFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAM 151

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRR 173
           +G+ +  R + V   ++    GP+ +        R     PRR
Sbjct: 152 NGTQLLTRTVYV---DWAFSRGPIQKLTSTRPLHRRSRTPPRR 191

ref|XP_394166.1| similar to ENSANGP00000018039 [Apis mellifera]
(350 aa)

Score: 43 bits (102), Expect: 0.00256579
Length: 72, Idn/Pos/Gap = 23/40/0 (31%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   ++A  AI +L
Sbjct: 269 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTNKCKGFGFVTMTNYDEAVVAIQSL 328

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 329 NGYTLGNRVLQV 340

dbj|BAD92063.1| ataxin 2-binding protein 1 isoform 4 variant [Homo sapiens]
(303 aa)

Score: 43 bits (102), Expect: 0.00258729
Length: 139, Idn/Pos/Gap = 41/65/11 (29%/46%/7%)

Query:   7 LSSAPPSSTGDGAHGGDSLSHTAKDSPSGATLIGETTEQGAAKPKSSRPFPNRPSESELQ  66
           L+  PP+ T    H   S + T+  + SG      TT+  A      +  P+  +E++ Q
Sbjct: 105 LNLYPPAQT----HSEQSPADTSAQTVSGTA----TTDDAAPTDGQPQTQPSENTENKSQ 156

Query:  67 NSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAA 126
               L V NIPF  R  DL ++F  +G ++D+ I ++   R  +GF FV  +    A+ A
Sbjct: 157 PK-RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRA 213

Query: 127 IAALDGSTMRERIIAVKRA 145
              L G+ +  R I V  A
Sbjct: 214 REKLHGTVVEGRKIEVNNA 232

gb|AAX70201.1| RNA-binding protein, putative [Trypanosoma brucei]
(857 aa)

Score: 43 bits (102), Expect: 0.00260896
Length: 155, Idn/Pos/Gap = 43/69/11 (27%/44%/7%)

Query:  40 GETTEQGAAKPKSSRPFPNRPS-----ESELQNSVGLMVRNIPFGTRQEDLLELFRPY-G  93
           GE  E+G    +     P  PS     E  ++ S  + + NIPF   +ED+ +    + G
Sbjct: 281 GEVLEKGDESEEDQLLCPENPSPRDDQEEVVRESRRIRLGNIPFIATEEDVKQFASSHVG 340

Query:  94 DVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYE----R 149
            V  + IP  R  ++ +G AFV+   +E A  A++   G+    R++ V  A  +    R
Sbjct: 341 PVEAVHIPLTRDTKQSKGAAFVKFARVEDAVNALSRCQGAIFMGRLLRVSAATEDPYAKR 400

Query: 150 GEGPVSQHAGASDGRRGQSRRPRRSDGRSTRRRRP 184
            E      AG S+ +R Q  + RR +G  T    P
Sbjct: 401 SEETAGGLAGNSEFKR-QKAKDRRKEGEGTSGVAP 434

gb|EAA13972.2| ENSANGP00000023038 [Anopheles gambiae str. PEST]
ref|XP_319086.1| ENSANGP00000023038 [Anopheles gambiae str. PEST]
(226 aa)

Score: 43 bits (102), Expect: 0.00263082
Length: 72, Idn/Pos/Gap = 23/40/0 (31%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   ++A  AI +L
Sbjct: 152 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIKDLQTNKCKGFGFVTMTNYDEAVVAIQSL 211

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 212 NGYTLGNRVLQV 223

gb|AAM66970.1| putative RNA-binding protein [Arabidopsis thaliana]
(289 aa)

Score: 43 bits (102), Expect: 0.00265287
Length: 106, Idn/Pos/Gap = 31/47/5 (29%/44%/4%)

Query:  60 PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQT 119
           P E      + L V N+PF      L +LF   G+V  + + +D+   R RGF FV + +
Sbjct:  82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141

Query: 120 LEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRR 165
           + + EAA    +G  +  R + V       G  P  +  G S G R
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN-----AGPPPPKREDGFSRGPR 182

gb|AAH68622.1| LOC414671 protein [Xenopus laevis]
(323 aa)

Score: 43 bits (102), Expect: 0.0027429
Length: 75, Idn/Pos/Gap = 24/47/1 (32%/62%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL + F  +G V+++ IP  +   ++RGFAFV+L+ + +A  A+   
Sbjct: 116 LIIRNLSFQCSEDDLKKHFSNFGSVLEVNIP-KKPDGKMRGFAFVQLKNMLEASKALKGT 174

Query: 131 DGSTMRERIIAVKRA 145
           +  +++ R +AV  A
Sbjct: 175 NMKSIKGRTVAVDWA 189

emb|CAG82565.1| unnamed protein product [Yarrowia lipolytica CLIB99]
ref|XP_500351.1| hypothetical protein [Yarrowia lipolytica]
(589 aa)

Score: 43 bits (101), Expect: 0.00281242
Length: 63, Idn/Pos/Gap = 24/37/0 (38%/58%/0%)

Query:  68 SVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAI 127
           ++ + V N+P    + DL ELF+P+G +  I IP D +LR   G A+V     + A+AA+
Sbjct:  18 TMSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHAYVTFYNPDHADAAL  77

Query: 128 AAL 130
            AL
Sbjct:  78 GAL  80


Score: 42 bits (98), Expect: 0.00692523
Length: 90, Idn/Pos/Gap = 30/44/4 (33%/48%/4%)

Query:  57 PNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVR 116
           P R  ++   N   L VR +   T +E L   F  +G V  + +P D    R +GF FV 
Sbjct: 181 PVRDPKTHFTN---LFVRGLSRETTEEALRAEFERFGAVTSLLLPLDES-HRAKGFGFVN 236

Query: 117 LQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
            +    A  A+AALDG+ +    I+V RA+
Sbjct: 237 FEEHRDAVTAVAALDGAELCGARISVSRAQ 266

ref|ZP_00364749.1| COG0724: RNA-binding proteins (RRM domain) [Polaromonas sp. JS666]
(151 aa)

Score: 43 bits (101), Expect: 0.00288371
Length: 83, Idn/Pos/Gap = 26/41/0 (31%/49%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+P+  R EDL + F  +G V    +  +R   R +GF FV + +  +A+AAI  +
Sbjct:   5 LYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGM  64

Query: 131 DGSTMRERIIAVKRAEYERGEGP 153
           +G  +  R + V  A       P
Sbjct:  65 NGQPLGGRSVVVNEARPMEARPP  87

gb|AAF78364.1| DAZ associated protein 1 [Homo sapiens]
(407 aa)

Score: 43 bits (101), Expect: 0.00288371
Length: 132, Idn/Pos/Gap = 34/58/8 (25%/43%/6%)

Query:  37 TLIGETTEQGAAKPKSSRPFPNRPSE-------SELQNSVGLMVRNIPFGTRQEDLLELF  89
           TL G   +     P+  +P   RP E       S+   S  + V  IP    + +L E F
Sbjct:  74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDYSKSNKIFVGGIPHNCGETELREYF 133

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
           + +G V ++ + +D + +R RGF F+  +  +  + A+       M ++ + VKRAE   
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK-VEVKRAEPRD 192

Query: 150 GEGPVSQHAGAS 161
            +       GAS
Sbjct: 193 SKSQAPGQPGAS 204

gb|EAL46397.1| enhancer binding protein-1 [Entamoeba histolytica HM-1:IMSS]
(306 aa)

Score: 43 bits (101), Expect: 0.00288371
Length: 115, Idn/Pos/Gap = 34/57/6 (29%/49%/5%)

Query:  41 ETTEQGAAKPKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFI 100
           + T   A K   ++    + +E +  +   + V+N+PF    E   +LF  Y DV++  I
Sbjct: 186 KITVAAAYKKVENKQTTKKTNEPKSLSETNVFVKNLPFTLTDEGFKKLFEKY-DVVEATI 244

Query: 101 --PWDRQLR--RIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGE 151
               +++L   R +G+ FV  +T EQ + AIA +D   +  R I V  A Y+R E
Sbjct: 245 VKRHNKKLNVDRSKGYGFVTFKTAEQQKKAIAEMDNFEVEGRKITVTSA-YQRAE 298

ref|XP_415181.1| PREDICTED: similar to squamous cell carcinoma antigen recognized by T cells 3; tat-interacting protein of 110 kDa [Gallus gallus]
(735 aa)

Score: 43 bits (101), Expect: 0.00295681
Length: 121, Idn/Pos/Gap = 34/58/10 (28%/47%/8%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L +  +PF   +E+L ++ + +G+V DI +  +R   + +G A+V  +   QA  A+  +
Sbjct: 575 LFISGLPFSCTKEELEDICKAHGNVKDIRLVTNRA-GKPKGLAYVEYENEAQASQAVLKM 633

Query: 131 DGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPR-----RSDGRSTRRRRPR 185
           DG T++E +I V  +     + P    A    GR  Q   PR     R  GR+     PR
Sbjct: 634 DGLTIKEHVIKVAISNPPLRKLPDKAEA----GRASQFAVPRQIYGARGKGRTQLSMMPR 689

Query: 186 S 186
           +
Sbjct: 690 A 690

ref|XP_586972.1| PREDICTED: similar to RNA-binding protein 28 (RNA binding motif protein 28), partial [Bos taurus]
ref|XP_612869.1| PREDICTED: similar to RNA-binding protein 28 (RNA binding motif protein 28), partial [Bos taurus]
(305 aa)

Score: 43 bits (101), Expect: 0.00298158
Length: 75, Idn/Pos/Gap = 23/46/1 (30%/61%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L++RN+ F   ++DL  +F  +G ++++ IP  +   ++RGFAFV+ + L +A  A+  +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFSQFGTILEVNIP-RKPDGKMRGFAFVQFKNLLEAGKALKGM 174

Query: 131 DGSTMRERIIAVKRA 145
           +   ++ R +AV  A
Sbjct: 175 NMKEIKGRTVAVDWA 189

ref|NP_991398.1| hypothetical protein LOC403096 [Xenopus tropicalis]
gb|AAH66129.1| Hypothetical protein MGC75848 [Xenopus tropicalis]
(465 aa)

Score: 43 bits (101), Expect: 0.00298158
Length: 87, Idn/Pos/Gap = 30/44/6 (34%/50%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +P E        L V N+P    +E++ +LF  YG   +IFI  D      +GF F+RL+
Sbjct:  59 KPGEKTYTQRSRLFVGNLPMDVTEEEMRKLFEKYGKAGEIFIHKD------KGFGFIRLE 112

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRA 145
           T   AE A A LD   +R + + V+ A
Sbjct: 113 TRTLAEIAKAELDNLPLRGKQLRVRFA 139

ref|XP_422700.1| PREDICTED: similar to Nuclear cap binding protein subunit 2 (20 kDa nuclear cap binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP interacting protein 1) (NIP1) [Gallus gallus]
(235 aa)

Score: 43 bits (101), Expect: 0.00305715
Length: 119, Idn/Pos/Gap = 37/56/5 (31%/47%/4%)

Query:  62 ESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLE 121
           E  L+ S  L V N+ F T +E + ELF   GD+  I +  D+  +   GF FV      
Sbjct: 112 ERLLRKSCTLYVGNLSFYTTEEQIHELFGKSGDIKKIIMGLDKVKKTACGFCFVEYYARG 171

Query: 122 QAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRRGQSRRPRRSDGRSTR 180
            AE A+  ++G+ + +RII   R +++ G     Q+     G  GQ R   R D  + R
Sbjct: 172 DAENAMRYINGTRLDDRII---RTDWDAGFKEGRQYGRGRSG--GQVRDEYRQDYDAGR 225

gb|AAL15235.1| putative RNA-binding protein [Arabidopsis thaliana]
gb|AAK43982.1| putative RNA-binding protein [Arabidopsis thaliana]
gb|AAM15222.1| putative RNA-binding protein [Arabidopsis thaliana]
gb|AAC98043.1| putative RNA-binding protein [Arabidopsis thaliana]
gb|AAK82513.1| At2g37220/F3G5.1 [Arabidopsis thaliana]
sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chloroplast precursor
ref|NP_181259.1| 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana]
(289 aa)

Score: 43 bits (101), Expect: 0.00305715
Length: 106, Idn/Pos/Gap = 31/47/5 (29%/44%/4%)

Query:  60 PSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQT 119
           P E      + L V N+PF      L +LF   G+V  + + +D+   R RGF FV + +
Sbjct:  82 PKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSS 141

Query: 120 LEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQHAGASDGRR 165
           + + EAA    +G  +  R + V       G  P  +  G S G R
Sbjct: 142 VSEVEAAAQQFNGYELDGRPLRVN-----AGPPPPKREDGFSRGPR 182

gb|AAX70101.1| RNA-binding protein, putative [Trypanosoma brucei]
(377 aa)

Score: 43 bits (101), Expect: 0.00308277
Length: 107, Idn/Pos/Gap = 31/53/2 (28%/49%/1%)

Query:  50 PKSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRI 109
           P SS+   +R   SEL +   L + N+     +  L ++F PYG+++   +  +      
Sbjct:   8 PPSSKLLRHR--SSELYSRDNLFMCNLSAAVDEAVLKQIFSPYGEILSAAVMRNIHTGDS  65

Query: 110 RGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYERGEGPVSQ 156
            G AFVR  T EQA AA+    G  +  R+++V+ A+ +    PV +
Sbjct:  66 LGTAFVRFATTEQARAALVGCHGRVVCGRVLSVQWAKRQHDGTPVGE 112

ref|NP_733829.1| DAZ associated protein 1 isoform a [Homo sapiens]
(378 aa)

Score: 43 bits (101), Expect: 0.0031086
Length: 132, Idn/Pos/Gap = 34/58/8 (25%/43%/6%)

Query:  37 TLIGETTEQGAAKPKSSRPFPNRPSE-------SELQNSVGLMVRNIPFGTRQEDLLELF  89
           TL G   +     P+  +P   RP E       S+   S  + V  IP    + +L E F
Sbjct:  74 TLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYF 133

Query:  90 RPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAEYER 149
           + +G V ++ + +D + +R RGF F+  +  +  + A+       M ++ + VKRAE   
Sbjct: 134 KKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKK-VEVKRAEPRD 192

Query: 150 GEGPVSQHAGAS 161
            +       GAS
Sbjct: 193 SKSQAPGQPGAS 204

dbj|BAC28122.1| unnamed protein product [Mus musculus]
(402 aa)

Score: 43 bits (101), Expect: 0.00316091
Length: 76, Idn/Pos/Gap = 20/42/0 (26%/55%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           E  +   L +R +P GT  +DL++L +PYG ++      D+   + +G+ FV   +   A
Sbjct:  51 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 110

Query: 124 EAAIAALDGSTMRERI 139
           + A+A+L  + ++ ++
Sbjct: 111 QKAVASLKANGVQAQM 126

ref|NP_705128.1| splicing factor, putative [Plasmodium falciparum 3D7]
emb|CAD52364.1| splicing factor, putative [Plasmodium falciparum 3D7]
(864 aa)

Score: 43 bits (101), Expect: 0.00316091
Length: 96, Idn/Pos/Gap = 27/52/1 (28%/54%/1%)

Query:  51 KSSRPFPNRPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIR 110
           K+++  P  P++  L+  +G ++  +   T QE L +LF P+GD++D+ I  D    + +
Sbjct: 572 KAAKHQPIDPNDIPLKLYIGGLLGPLSNITEQE-LKQLFNPFGDILDVEIHRDPYTGKSK 630

Query: 111 GFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
           GF F++     +A  A+  ++G  +  R I V  A+
Sbjct: 631 GFGFIQFHKASEAIEALTVMNGMEVAGREIKVGYAQ 666

gb|AAH45128.1| Efna2-prov protein [Xenopus laevis]
(464 aa)

Score: 43 bits (101), Expect: 0.00316091
Length: 87, Idn/Pos/Gap = 30/45/6 (34%/51%/6%)

Query:  59 RPSESELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQ 118
           +PSE        L V N+P    +E++ +LF  +G   +IFI  D      +GF F+RL+
Sbjct:  58 KPSEKTFTQRSRLFVGNLPSDVTEEEMRKLFEKFGKAGEIFIHKD------KGFGFIRLE 111

Query: 119 TLEQAEAAIAALDGSTMRERIIAVKRA 145
           T   AE A A LD   +R + + V+ A
Sbjct: 112 TRTLAEIAKAELDNLPLRGKQLRVRFA 138

ref|NP_572842.1| CG4396-PA [Drosophila melanogaster]
gb|AAF43091.1| putative RNA binding protein [Drosophila melanogaster]
gb|AAF48215.3| CG4396-PA [Drosophila melanogaster]
(356 aa)

Score: 43 bits (101), Expect: 0.00326818
Length: 72, Idn/Pos/Gap = 23/40/0 (31%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   ++A  AI +L
Sbjct: 275 IFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYDEAVVAIQSL 334

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 335 NGYTLGNRVLQV 346

ref|NP_476936.2| CG3151-PD, isoform D [Drosophila melanogaster]
gb|AAN10401.2| CG3151-PD, isoform D [Drosophila melanogaster]
(642 aa)

Score: 43 bits (101), Expect: 0.00326818
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 561 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 620

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 621 NGYTLGNRVLQV 632

ref|YP_094305.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
gb|AAU26358.1| RNA binding protein, cold-inducible rrm [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
(92 aa)

Score: 43 bits (101), Expect: 0.00326818
Length: 76, Idn/Pos/Gap = 24/43/1 (31%/56%/1%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+PFGT +E L   F  YG + ++F+  DR   +++GF F+     ++AE+A+  +
Sbjct:   7 IYVGNLPFGTTEEALSIQFSQYGKIEEMFLIKDRLTGQMKGFGFITFSAQQEAESAL-EM  65

Query: 131 DGSTMRERIIAVKRAE 146
           +G     R + V  A+
Sbjct:  66 NGQPFDGRSLKVCMAQ  81

ref|ZP_00243386.1| COG0724: RNA-binding proteins (RRM domain) [Rubrivivax gelatinosus PM1]
(162 aa)

Score: 43 bits (101), Expect: 0.00329557
Length: 75, Idn/Pos/Gap = 25/40/0 (33%/53%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ +  R +DL + F  +G V    +  DR   R +GF FV + +  +A+AAI  +
Sbjct:   5 LYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGM  64

Query: 131 DGSTMRERIIAVKRA 145
           +G ++  R I V  A
Sbjct:  65 NGQSLSGRAIVVNEA  79

gb|AAH30290.1| Unknown (protein for MGC:39946) [Homo sapiens]
(251 aa)

Score: 43 bits (101), Expect: 0.00329557
Length: 76, Idn/Pos/Gap = 20/42/0 (26%/55%/0%)

Query:  64 ELQNSVGLMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQA 123
           E  +   L +R +P GT  +DL++L +PYG ++      D+   + +G+ FV   +   A
Sbjct:  47 EQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAA 106

Query: 124 EAAIAALDGSTMRERI 139
           + A+A+L  + ++ ++
Sbjct: 107 QKAVASLKANGVQAQM 122

emb|CAG78182.1| unnamed protein product [Yarrowia lipolytica CLIB99]
ref|XP_505375.1| hypothetical protein [Yarrowia lipolytica]
(422 aa)

Score: 43 bits (101), Expect: 0.00329557
Length: 62, Idn/Pos/Gap = 21/38/0 (33%/61%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           L V N+ F T ++DL  +F  YG V+ I +P   +  + +GF +V+  ++++A+AA+  L
Sbjct: 272 LFVGNLSFDTNRDDLFGIFGEYGSVVSIRLPTHPETEQPKGFGYVQFGSVDEAKAALEGL 331

Query: 131 DG 132
            G
Sbjct: 332 SG 333

ref|NP_476937.2| CG3151-PA, isoform A [Drosophila melanogaster]
gb|AAF51179.3| CG3151-PA, isoform A [Drosophila melanogaster]
(647 aa)

Score: 43 bits (101), Expect: 0.00329557
Length: 72, Idn/Pos/Gap = 24/40/0 (33%/55%/0%)

Query:  71 LMVRNIPFGTRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAAL 130
           + V N+   T +  L +LF P+G V  + +  D Q  + +GF FV +   E+A  AI +L
Sbjct: 566 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSL 625

Query: 131 DGSTMRERIIAV 142
           +G T+  R++ V
Sbjct: 626 NGYTLGNRVLQV 637

emb|CAC27531.1| eukaryotic translation initiation factor 3 p42 [Platichthys flesus]
(125 aa)

Score: 43 bits (101), Expect: 0.00332318
Length: 111, Idn/Pos/Gap = 35/52/7 (31%/46%/6%)

Query:  43 TEQGAAKPKSSRPFPNRPSESELQNSVG-------LMVRNIPFGTRQEDLLELFRPYGDV  95
           ++ G   P S R    R  ES   N  G       + V N+   TR+ DL ELFRP+G +
Sbjct:  11 SKTGKYVPPSLRDGGTRRGESMQPNRRGGADDNATIRVTNLSEDTRETDLQELFRPFGSI  70

Query:  96 IDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERIIAVKRAE 146
             I++  D+   + +G AF+     E A  AIA + G      I+ V+ A+
Sbjct:  71 SRIYLAKDKNTGQSKGLAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 121

ref|NP_990009.1| transformer-2 beta [Gallus gallus]
gb|AAG35783.1| transformer-2 beta [Gallus gallus]
(289 aa)

Score: 43 bits (101), Expect: 0.0033791
Length: 74, Idn/Pos/Gap = 28/41/0 (37%/55%/0%)

Query:  80 TRQEDLLELFRPYGDVIDIFIPWDRQLRRIRGFAFVRLQTLEQAEAAIAALDGSTMRERI 139
           T + DL E+F  YG + D+ I +D+Q RR RGFAFV  + +E A+ A    +G  +  R 
Sbjct: 129 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERANGMELDGRR 188

Query: 140 IAVKRAEYERGEGP 153
           I V  +  +R   P
Sbjct: 189 IRVDFSITKRPHTP 202

Cyanidioschyzon merolae Genome Project