Cyanidioschyzon merolae Genome Project

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CMM201C (526 aa)
by blastp 2.2.10 [Oct-19-2004] against nr [Apr-30-2005] (XML result)


COG1142: Fe-S-cluster-containing hydrogenase components 2 [Crocosphaera watsonii WH 8501]

unknown protein [Oryza sativa (japonica cultivar-group)]

COG1142: Fe-S-cluster-containing hydrogenase components 2 [Anabaena variabilis ATCC 29413]

hypothetical protein sll0031 [Synechocystis sp. PCC 6803]

alr2308 [Nostoc sp. PCC 7120]

hypothetical protein gll3769 [Gloeobacter violaceus PCC 7421]

hypothetical protein tlr0739 [Thermosynechococcus elongatus BP-1]

COG1142: Fe-S-cluster-containing hydrogenase components 2 [Trichodesmium erythraeum IMS101]

COG1142: Fe-S-cluster-containing hydrogenase components 2 [Nostoc punctiforme PCC 73102]

light dependent period [Synechococcus sp. PCC 7942]

7Fe-8S cluster-binding motif protein [Synechococcus elongatus PCC 6301]

putative ldpA protein [Synechococcus sp. WH 8102]

hypothetical protein PMM1560 [Prochlorococcus marinus subsp. pastoris str. CCMP1986]

Fe-S cluster containing protein [Prochlorococcus marinus subsp. marinus str. CCMP1375]

conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]

coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus maripaludis S2]

polyferredoxin [Methanococcus maripaludis S2]

Electron transport protein, containing 4Fe-4S binding domain [Pyrococcus abyssi GE5]

putative oxidoreductase, Fe-S protein [Escherichia coli K12]

orf, hypothetical protein [Escherichia coli O157:H7 EDL933]

Ferredoxin [Methanopyrus kandleri AV19]

hypothetical protein SF3617 [Shigella flexneri 2a str. 301]

related to hydrogenase [Desulfotalea psychrophila LSv54]

putative oxidoreductase, Fe-S protein [Escherichia coli K12]

electron transport protein [Erwinia carotovora subsp. atroseptica SCRI1043]

Putative electron transport protein ygfS

putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 EDL933]

Putative electron transport protein ygfS [Escherichia coli CFT073]

Putative electron transport protein ysaA [Escherichia coli CFT073]
 
ref|ZP_00177066.2| COG1142: Fe-S-cluster-containing hydrogenase components 2 [Crocosphaera watsonii WH 8501]
(350 aa)

Score: 201 bits (512), Expect: 3.89492e-50
Length: 379, Idn/Pos/Gap = 130/199/69 (34%/52%/18%)

Query: 145 APRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEA 204
           +P +SL +G WFKLICGASF ++  I  L+  YAL GA+C+D AA+PAV++A  +G++ A
Sbjct:   6 SPLTSLRAGEWFKLICGASFQDLPAIRSLSLIYALVGANCIDVAADPAVIKAAREGINLA  65

Query: 205 ERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPA 264
              W   +         ++      +PW+MVS+ D E +PHFRKA  + D       C  
Sbjct:  66 -MEWAEIVR--------NKGYPQINKPWLMVSLNDGE-DPHFRKA--YFDERLCPSDCLR 113

Query: 265 PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
           PC  +CPA A+ LP+           GI   RCYGCGRC+P CP +LIET S   TP+ +
Sbjct: 114 PCESICPAQAI-LPS-----------GIIEQRCYGCGRCLPVCPLNLIETRSQTITPETI 161

Query: 325 MALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIA 384
           + L+++  +DA+E+HT+    + F  LW  ++   ++  +KL+AIS P+           
Sbjct: 162 LQLLKSNGVDAIEIHTQVGREQKFKELW-QQLSPGIK-QLKLLAISCPDGK--------- 210

Query: 385 RLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYF 444
                  +D   T+ E  +  P    L+WQ DG+PM+GD+G   TT A +R    +    
Sbjct: 211 -----GLIDYLQTLYEIISPLPCE--LIWQTDGRPMSGDIGK-GTTHAAIRLGKKVLAS- 261

Query: 445 RRNPHLLAARGFIQCAGGTNAHTIPLLEGVDG----------VHGVAYGGYARRLVATGG 494
                     G++Q AGGTN +T+P L+ +            + G+AYG YAR L++   
Sbjct: 262 -------GLPGWVQLAGGTNDYTVPRLKELGLLGSSSSSKPTIAGIAYGSYARTLISP-- 312

Query: 495 YEAAQRLVQQVKTRLVSPK 513
                  +  ++T+L+S K
Sbjct: 313 ------FLNTMETQLISSK 325



ref|XP_475608.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gb|AAS55770.2| unknown protein [Oryza sativa (japonica cultivar-group)]
(412 aa)

Score: 197 bits (501), Expect: 5.96253e-49
Length: 373, Idn/Pos/Gap = 130/184/71 (34%/49%/19%)

Query: 148 SSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAERR 207
           ++L  G W KLICGASF +  ++  L+  Y LAG DC+DCAA+ +VV AV +G+D A   
Sbjct:  37 AALRRGDWVKLICGASFEDAADVRNLSLVYTLAGVDCIDCAADASVVGAVNEGIDVAA--  94

Query: 208 WRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCA 267
                           +  +  RPW+MVS+ DD  + HFRKA    +   P   C  PC 
Sbjct:  95 ---------------SIVPAVQRPWVMVSVNDDCRDLHFRKAEFDPEDCPP--DCSKPCE 137

Query: 268 QLCPADALTLPATAKNVNQFQI--------FGISSTRCYGCGRCIPACPYHLIETHSSKQ 319
           ++CPADA+ L          Q          G+ + RCYGCGRC+  CPY  I   S  +
Sbjct: 138 KVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYGCGRCLSVCPYDRIRAMSYVR 197

Query: 320 TPQQVMALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSV 379
            P     L++   +DA+E+HT    ++ F  LW S +G ++   +KLIA+S+P+  D +V
Sbjct: 198 DPAMTAELLKRNDVDAIEIHTTGKGTDMFNTLW-SNLGESIN-NVKLIAVSLPDVGDSTV 255

Query: 380 FEYIARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATS 439
                 L+   +      +Q            LWQ DG+PM+GD+G  A TR TV +A  
Sbjct: 256 -----NLMNAIYTTMQSHLQGYN---------LWQLDGRPMSGDIGRGA-TRETVSFAVH 300

Query: 440 LAEYFRRNPHLLAARGFIQCAGGTNAHTIPLLE----------------GVDG-----VH 478
           L+    R P      GF Q AGGTN++TI  L+                GV       + 
Sbjct: 301 LSSMSNRPP------GFYQLAGGTNSYTIESLKKAGLFQSTTFPGAATSGVTDCQQAFIG 354

Query: 479 GVAYGGYARRLVA 491
           G+AYGGYAR++V 
Sbjct: 355 GIAYGGYARKIVG 367



ref|ZP_00161825.1| COG1142: Fe-S-cluster-containing hydrogenase components 2 [Anabaena variabilis ATCC 29413]
(383 aa)

Score: 194 bits (492), Expect: 7.34764e-48
Length: 410, Idn/Pos/Gap = 141/204/85 (34%/49%/20%)

Query: 145 APRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEA 204
           AP  SL  G WFKLICGASF  +  +  LT  Y LAGADC+D AA+PAV++   + +  A
Sbjct:   6 APLQSLNQGHWFKLICGASFQHLPAVRSLTLAYTLAGADCIDVAADPAVIRDAKEAIQVA  65

Query: 205 ERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPA 264
               +         A+   L      P +MVS+ D E +PHFRKA  +   H P   CP 
Sbjct:  66 RNLVK--------AAQARGLDYQGHAPLLMVSLNDGE-DPHFRKAEFN-PHHCPA-DCPR 114

Query: 265 PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
           PC ++CPA A+       N +     G+ S +CYGCGRC+P CPY +I T+S   TP+ +
Sbjct: 115 PCEKICPAQAIVFNHQKDNFS-----GVESQKCYGCGRCLPVCPYDIIYTNSYMSTPEAI 169

Query: 325 MALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIA 384
             +V +  IDAVE+HT+      F  LW  ++       +K++AIS P+           
Sbjct: 170 APMVMSAGIDAVEIHTKVGRLAEFKQLW--QVISPWADQLKVLAISCPD----------- 216

Query: 385 RLVYGAHVDES-GTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEY 443
               G H+ E   ++ E  +  P+T  L+WQ DG+PM+GD+G   TT A V+        
Sbjct: 217 ----GKHLVEYLQSIYELISPLPTT--LIWQTDGRPMSGDIG-DGTTLAAVKLGQK---- 265

Query: 444 FRRNPHLLAAR--GFIQCAGGTNAHTIPLL-----------EGVD--------------G 476
                 +LAA+  G+IQ AGGTN++T+  L           +G D               
Sbjct: 266 ------VLAAKLPGYIQLAGGTNSYTVAKLKAMGLLKKAREQGADSRGEISPLTPHPSVS 319

Query: 477 VHGVAYGGYARRLVATGGYEAAQRLVQQVKTRLVSP---KAANREAVQPE 523
           + GVAYG YAR +++         +++Q++ + VS    KA  R   +PE
Sbjct: 320 IAGVAYGSYARVMLSP--------IIEQLEKKEVSNSSVKATVRLEEEPE 361



ref|NP_442728.1| hypothetical protein sll0031 [Synechocystis sp. PCC 6803]
dbj|BAA10799.1| sll0031 [Synechocystis sp. PCC 6803]
pir||S75952 hypothetical protein - Synechocystis sp. (strain PCC 6803)
(395 aa)

Score: 190 bits (483), Expect: 7.16808e-47
Length: 356, Idn/Pos/Gap = 131/185/51 (36%/51%/14%)

Query: 145 APRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEA 204
            PR SLE G W KLICGAS+ ++T I  L   Y LAG DC+D AA+PAVV+   +G+  A
Sbjct:  23 GPRQSLERGRWVKLICGASYQDLTAIRNLVLVYTLAGVDCIDLAADPAVVRVAQEGIKVA  82

Query: 205 ERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPA 264
                    ++SS    +    S   PW+MVS+ D E +PHFRKA+       P   CP 
Sbjct:  83 LS------LANSSHYEVETFDYSIQPPWLMVSLNDGE-DPHFRKAQFDPQKCPP--DCPR 133

Query: 265 PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
           PCAQ+CPA A+T      + ++    G+ + +CYGCGRC+P CP  +I T+S + T   +
Sbjct: 134 PCAQVCPAWAIT-----SDADEVVPTGVWAEKCYGCGRCLPICPQGIITTYSHQATVTSL 188

Query: 325 MALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATM-KLIAISMPEPNDWSVFEYI 383
           +  +    I A+E+HT+    E F  LW     R+L   + +L AI++  P      EY+
Sbjct: 189 VPWLELGQIAALEIHTQVGHEERFQQLW-----RSLAPVLTQLQAIAISCPYHAEAVEYL 243

Query: 384 ARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEY 443
             +        SG +   P   P+    +WQ DG+PM+GD+G   TT   + YA  + + 
Sbjct: 244 QTI--------SGWL--GPLAMPT----IWQTDGRPMSGDIGR-GTTHLCLHYADQVLQS 288

Query: 444 FRRNPHLLAARGFIQCAGGTNAHTIPLLEGVD--------GVHGVAYGGYARRLVA 491
                   +  GF+Q AGGTN HTI  L   D         V+GVA+G  AR L+A
Sbjct: 289 --------SLSGFVQLAGGTNCHTITKLSSQDFSVHQSKRMVNGVAFGSCARTLIA 336



dbj|BAB74007.1| alr2308 [Nostoc sp. PCC 7120]
ref|NP_486348.1| hypothetical protein alr2308 [Nostoc sp. PCC 7120]
pir||AE2094 hypothetical protein alr2308 [imported] - Nostoc sp. (strain PCC 7120)
(425 aa)

Score: 183 bits (465), Expect: 1.04404e-44
Length: 333, Idn/Pos/Gap = 122/174/49 (36%/52%/14%)

Query: 145 APRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEA 204
           AP  SL  G WFKLICGASF  +  +  LT  Y LAGADC+D AA+PAV++   + +  A
Sbjct:   6 APLQSLNQGHWFKLICGASFQHLPAVRSLTLAYTLAGADCIDVAADPAVIRDAKEAIQVA  65

Query: 205 ERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPA 264
                         A+   L      P +MVS+ D E +PHFRKA  +   H P   CP 
Sbjct:  66 RNL--------VQAAQARGLDYKGHAPLLMVSLNDGE-DPHFRKAEFN-PHHCPS-DCPR 114

Query: 265 PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
           PC ++CPA A+       N +     G+ S +CYGCGRC+P CPY +I T+S    P+ +
Sbjct: 115 PCEKICPAQAIVFNHQKDNFS-----GVESQKCYGCGRCLPVCPYDIIYTNSYMSPPEAI 169

Query: 325 MALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIA 384
             +V +  IDAVE+HT+      F  LW  ++       +K++AIS P+           
Sbjct: 170 APMVLSAGIDAVEIHTKVGRLAEFKQLW--QVISPWADQLKVLAISCPD----------- 216

Query: 385 RLVYGAHVDES-GTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEY 443
               G H+ E   ++ E  +  P+T  L+WQ DG+PM+GD+G   TT A V+        
Sbjct: 217 ----GKHLVEYLQSIYELISPLPTT--LIWQTDGRPMSGDIG-DGTTLAAVKLGQK---- 265

Query: 444 FRRNPHLLAAR--GFIQCAGGTNAHTIPLLEGV 474
                 +LAA+  G+IQ AGGTN++T+  L+ +
Sbjct: 266 ------VLAAKLPGYIQLAGGTNSYTVAKLKAM 292



ref|NP_926715.1| hypothetical protein gll3769 [Gloeobacter violaceus PCC 7421]
dbj|BAC91710.1| gll3769 [Gloeobacter violaceus PCC 7421]
(351 aa)

Score: 182 bits (462), Expect: 1.95205e-44
Length: 396, Idn/Pos/Gap = 139/199/67 (35%/50%/16%)

Query: 144 AAPRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDE 203
           A P  SL +G+WFKLI GAS   +  ++ L   Y LAGADC+D +A+PAV+ AV + +  
Sbjct:   5 ARPYGSLAAGSWFKLIGGASLQNLPTLSNLALVYTLAGADCIDVSADPAVIAAVGEAMVH  64

Query: 204 AERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCP 263
             R   ++         PD      A P++MVS++D + +PHFRKA  H DA      CP
Sbjct:  65 GHRLAGFS---------PD------AGPFLMVSLSDGD-DPHFRKA--HFDAERCPSDCP 106

Query: 264 APCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQ 323
            PC ++CP DA+               GI + RCYGCGRC P CP  LIE  + +     
Sbjct: 107 RPCLRICPVDAIAAG------------GIEALRCYGCGRCAPVCPLGLIEFRAWQAEVAT 154

Query: 324 VMALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYI 383
           + AL+ + P+DAVE+HT     E F  LW        R  +KL+A+S P+  +  + E++
Sbjct: 155 IGALLADCPVDAVEIHTHRGNLEGFKRLWRGLAPVLPR--LKLVAVSFPD--EPGMREHL 210

Query: 384 ARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEY 443
           A        D    ++  P +  +   ++WQ DG PM+GDL A  T RA+VR+A  ++ +
Sbjct: 211 A--------DLWEVMRAGPLSDAARSHIVWQIDGIPMSGDL-ARGTARASVRFAREVSTW 261

Query: 444 FRRNPHLLAARGFIQCAGGTNAHTIPLLEGVD-GVHGVAYGGYARRLVA----TG----- 493
             R P      G++Q AGGTN  ++ L       + G+ YG YAR+LV     TG     
Sbjct: 262 --RLP------GYLQLAGGTNDASVELARAAGLAIGGIGYGSYARQLVQAETETGPLAEE 313

Query: 494 ------GYEAAQRLVQQVKTRLVSPKAANREAVQPE 523
                   E A+ LV Q+K  L    AA      P+
Sbjct: 314 PERLRRAVEQARALVCQLKPHLQQEGAAPWLTTTPQ 349



ref|NP_681528.1| hypothetical protein tlr0739 [Thermosynechococcus elongatus BP-1]
dbj|BAC08290.1| tlr0739 [Thermosynechococcus elongatus BP-1]
(342 aa)

Score: 176 bits (447), Expect: 1.37578e-42
Length: 344, Idn/Pos/Gap = 123/175/66 (35%/50%/19%)

Query: 155 WFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAERRWRWTLTS 214
           WFKLI GASF +V +I  LT  YALAGADC+D AA+PAV+ A  + L  A          
Sbjct:  16 WFKLINGASFQDVAQIYNLTLAYALAGADCIDVAADPAVIYAANEALTVAA---------  66

Query: 215 DSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCAQLCPADA 274
                     +    RP +MVSI +D  +PHFRKAR       P   C  PC ++CPA+A
Sbjct:  67 ----------SLGATRPLLMVSI-NDGADPHFRKARFDPSRCPP--GCDRPCERICPAEA 113

Query: 275 LTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVMALVRNYPID 334
           +            Q+ G+   RCYGCGRC+P CP+ LI T       + +  L+R   I 
Sbjct: 114 IRF--------HEQVQGVVRDRCYGCGRCLPLCPWGLISTDEQPAVFEDITPLIRAGTIQ 165

Query: 335 AVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIARLVYGAHVDE 394
           A+E+HT+     +F  LW  +        ++++AIS P+     + +Y+  +        
Sbjct: 166 ALEIHTQPQRYRAFEELW--QRVHPWVPYLQVLAISCPQGE--RIIDYLRWI-------- 213

Query: 395 SGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYFRRNPHLLAAR 454
           +  +Q      P    L+WQ DG+PM+GD+G   TTRAT+++  +          +L A 
Sbjct: 214 NRQIQ------PLACALIWQADGRPMSGDIG-DGTTRATIQFGQA----------ILGAN 256

Query: 455 --GFIQCAGGTNAHTIPLLEGV-----DGVHGVAYGGYARRLVA 491
             GF+Q AGGTN HT+  L  +      G+ GVAYG YAR+ +A
Sbjct: 257 LPGFVQLAGGTNGHTVAKLRAMGLLAPGGIAGVAYGSYARKRLA 300



ref|ZP_00327193.1| COG1142: Fe-S-cluster-containing hydrogenase components 2 [Trichodesmium erythraeum IMS101]
(405 aa)

Score: 174 bits (441), Expect: 6.65916e-42
Length: 372, Idn/Pos/Gap = 128/179/67 (34%/48%/18%)

Query: 146 PRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAE 205
           P +SL+ G WFKLICGASF  +  +  LT  Y LAGADC+D AA+PA + A  + ++ A 
Sbjct:   7 PLNSLKEGHWFKLICGASFQHLPTVRNLTLAYTLAGADCIDVAADPAAIAATKEAVEVAS  66

Query: 206 RRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAP 265
           +   W        A+  +     ARP IM SI D E +PHFRKA    D+     +C  P
Sbjct:  67 QLKSW--------AKNHKFGYQ-ARPLIMASINDGE-DPHFRKAEF--DSTICPIECWRP 114

Query: 266 CAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVM 325
           C ++CPA+A+        +N     G+    CYGCGRC+  CP  LI+  S   TP  + 
Sbjct: 115 CEKVCPAEAIVFFEKDNAIN-LGNSGVIDELCYGCGRCLSVCPNQLIQARSYVSTPSSIA 173

Query: 326 ALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIAR 385
           +L+    +DA+E+HT+      F  LW S   +     +KLIAIS  +  D  + EY+  
Sbjct: 174 SLILQTGVDAIEIHTQVGRETDFQRLWKSI--KPWVNQLKLIAISCQD--DEGLIEYLQS 229

Query: 386 LVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYFR 445
           L           +   P +      L+WQ DGKPM+GD+G   TT AT++ +  + +   
Sbjct: 230 LY--------KIISPLPCS------LIWQTDGKPMSGDIGV-GTTAATIKLSQKVLD--- 271

Query: 446 RNPHLLAARGFIQCAGGTNAHT--------------------------IPLLEGVDGVHG 479
                    G++Q AGGTN  T                          IP+ E    V G
Sbjct: 272 -----AGLPGYVQLAGGTNNSTVVKLIALGLLANKSLKQDKDYINNFNIPISEN-KFVAG 325

Query: 480 VAYGGYARRLVA 491
           VAYG YAR L++
Sbjct: 326 VAYGSYARILLS 337



ref|ZP_00109768.1| COG1142: Fe-S-cluster-containing hydrogenase components 2 [Nostoc punctiforme PCC 73102]
(406 aa)

Score: 166 bits (419), Expect: 2.00444e-39
Length: 331, Idn/Pos/Gap = 123/171/47 (37%/51%/14%)

Query: 146 PRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAE 205
           P  SL+ G WFKLICGASF  +  +  LT  Y LAGADC+D AA+PAV+ A   GL  A+
Sbjct:   7 PLQSLKQGDWFKLICGASFQHLPAVRNLTLAYTLAGADCIDVAADPAVIAAAQAGLQVAK  66

Query: 206 RRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAP 265
                TL  D   A+          P++MVS+ D E +PHFRKA  +    +    CP P
Sbjct:  67 -----TLAKD---AQKRGFDYKGNLPFLMVSLNDGE-DPHFRKAEFNPTECSR--DCPRP 115

Query: 266 CAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVM 325
           C ++CPA A+   +   + +     G+ S +CYGCGRCIP CPY +I T S    P  + 
Sbjct: 116 CERICPAQAIVFDSIKDDFS-----GVVSEKCYGCGRCIPICPYGIIYTASYVAPPGAIA 170

Query: 326 ALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIAR 385
            LV +  +DAVE+HT+      F  LW  +        +K++AIS P+    +  +Y+ R
Sbjct: 171 PLVMSTGVDAVEIHTQVGRLAEFQRLW--QAISPWADQLKVLAISCPDGEGMT--DYL-R 225

Query: 386 LVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYFR 445
            VY                 P    L+WQ DG+ M+GD+G   TT A VR          
Sbjct: 226 AVYD-------------LISPLKSALIWQTDGRSMSGDIG-DGTTIAAVRLGQK------ 265

Query: 446 RNPHLLAAR--GFIQCAGGTNAHTIPLLEGV 474
               +LAA+  G++Q AGGTN++T+  L+ V
Sbjct: 266 ----VLAAKLPGYVQLAGGTNSYTVAKLKAV 292



gb|AAN06910.1| light dependent period [Synechococcus sp. PCC 7942]
ref|ZP_00351133.1| COG0079: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Synechococcus elongatus PCC 7942]
(352 aa)

Score: 164 bits (416), Expect: 4.50283e-39
Length: 379, Idn/Pos/Gap = 131/186/72 (34%/49%/18%)

Query: 143 SAAPRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLD 202
           ++ P  +L++G WFKLICGAS+  +  I  L   YALAGADCVD AAEPAVV++ L GL 
Sbjct:   3 ASFPLEALQAGHWFKLICGASYQHLPVIRNLALTYALAGADCVDVAAEPAVVRSALAGLA  62

Query: 203 EAERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQC 262
             ER     LT                RPW+MVS+ D E + HFR+A    D   P   C
Sbjct:  63 AYER-----LTGRD-------------RPWLMVSLNDGE-DLHFRRAWFDPD-RCPT-DC 101

Query: 263 PAPCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQ 322
           P PC ++CP DA+T              G+   RCYGCGRC+P CP  LIE  + +    
Sbjct: 102 PRPCERVCPTDAITST------------GVQRDRCYGCGRCLPICPLGLIEAQAWQVDAA 149

Query: 323 QVMALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEY 382
            ++  + +  I+A+E+HT+    + F  LW        +     IAIS P   +   + +
Sbjct: 150 ALLPELLDLGINAIEIHTQVGHQKEFQQLWQQLQPWLPQLQA--IAISCPAHPEAIAYLW 207

Query: 383 IARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAE 442
             + + G  V+                 ++WQ DG+PM+GD+GA  TT A VR+A ++  
Sbjct: 208 DLQELVGNTVE----------------TVIWQTDGRPMSGDIGA-GTTHAAVRFAQAM-- 248

Query: 443 YFRRNPHLLAARGFIQCAGGTNAHTIPLLEGVD--------GVHGVAYGGYARRLVATGG 494
                P      G +Q AGGTNAHT+  L+ +          V G+A GG AR  +A   
Sbjct: 249 -LTEGP-----PGHVQLAGGTNAHTVAKLQELKLLAPQVSRFVAGIACGGAARTPLA--- 299

Query: 495 YEAAQRLVQQVKTRLVSPK 513
            E  + L +Q ++    P+
Sbjct: 300 -ELLEPLAEQQRSLEAHPE 317



ref|YP_171610.1| 7Fe-8S cluster-binding motif protein [Synechococcus elongatus PCC 6301]
dbj|BAD79090.1| 7Fe-8S cluster-binding motif protein [Synechococcus elongatus PCC 6301]
(352 aa)

Score: 161 bits (408), Expect: 3.84381e-38
Length: 379, Idn/Pos/Gap = 130/185/72 (34%/48%/18%)

Query: 143 SAAPRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLD 202
           ++ P  +L++G WFKLICGAS+  +  I  L   YALAGADCVD AAEPAVV++ L GL 
Sbjct:   3 ASFPLEALQAGHWFKLICGASYQHLPVIRNLALTYALAGADCVDVAAEPAVVRSALAGLA  62

Query: 203 EAERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQC 262
             ER     LT                RPW+MVS+ D E + HF +A    D   P   C
Sbjct:  63 AYER-----LTGRD-------------RPWLMVSLNDGE-DLHFPRAWFDPD-RCPT-DC 101

Query: 263 PAPCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQ 322
           P PC ++CP DA+T              G+   RCYGCGRC+P CP  LIE  + +    
Sbjct: 102 PRPCERVCPTDAITST------------GVQRDRCYGCGRCLPICPLGLIEAQAWQVDAA 149

Query: 323 QVMALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEY 382
            ++  + +  I+A+E+HT+    + F  LW        +     IAIS P   +   + +
Sbjct: 150 ALLPELLDLGINAIEIHTQVGHQKEFQQLWQQLQPWLPQLQA--IAISCPAHPEAIAYLW 207

Query: 383 IARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAE 442
             + + G  V+                 ++WQ DG+PM+GD+GA  TT A VR+A ++  
Sbjct: 208 DLQELVGNTVE----------------TVIWQTDGRPMSGDIGA-GTTHAAVRFAQAM-- 248

Query: 443 YFRRNPHLLAARGFIQCAGGTNAHTIPLLEGVD--------GVHGVAYGGYARRLVATGG 494
                P      G +Q AGGTNAHT+  L+ +          V G+A GG AR  +A   
Sbjct: 249 -LTEGP-----PGHVQLAGGTNAHTVAKLQELKLLAPQVSRFVAGIACGGAARTPLA--- 299

Query: 495 YEAAQRLVQQVKTRLVSPK 513
            E  + L +Q ++    P+
Sbjct: 300 -ELLEPLAEQQRSLEAHPE 317



emb|CAE08580.1| putative ldpA protein [Synechococcus sp. WH 8102]
ref|NP_898156.1| putative ldpA protein [Synechococcus sp. WH 8102]
(348 aa)

Score: 157 bits (396), Expect: 1.00371e-36
Length: 353, Idn/Pos/Gap = 123/176/54 (34%/49%/15%)

Query: 145 APRSSLESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEA 204
           +P  +L  G W KLICGAS  ++  IA L   Y  AG DCVD AA+PAVV+A L GL   
Sbjct:  12 SPHDALRRGHWVKLICGASNQDLPAIADLCAVYGAAGIDCVDVAADPAVVRAALQGL---  68

Query: 205 ERRWRWTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPA 264
             +W   + +              ARPW+MVS++D   + HFRKA     A  P   CP 
Sbjct:  69 --QWLDQIGT--------------ARPWLMVSVSDGS-DAHFRKAWFD-PARCPA-DCPR 109

Query: 265 PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
           PC ++CPA+A+             +  +   RCYGCGRC+P+CP  LIE    + +   +
Sbjct: 110 PCQRVCPAEAIA-----------AVGAVDERRCYGCGRCLPSCPLGLIEERDHRLSSDAI 158

Query: 325 MALVRNYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIA 384
             L+ +   DAVEVHT     E+F  L  +++       ++ +A+S            + 
Sbjct: 159 AELLASMRPDAVEVHTAPGRGEAFDTL-LAQLA-VAGVPLQRLAVSCGLEGHALTPAALG 216

Query: 385 RLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYF 444
           + ++  H     +++    +P      LWQ DG+PM+GD+GA      T R A  L  + 
Sbjct: 217 QELWQRH----SSLRRWGFSP------LWQLDGRPMSGDVGA-----GTARVAVQLWRWM 261

Query: 445 RRNPHLLAARGFIQCAGGTNAHTIPLLEGVDGVHGVAYGGYARRLVATGGYEA 497
           +     LA  G +Q AGGTNA T+ LL   +   GVA+GG ARRL+    +EA
Sbjct: 262 QP----LAPPGPLQLAGGTNASTVQLLRPEERPAGVAFGGMARRLLMPLIHEA 310



ref|NP_893677.1| hypothetical protein PMM1560 [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
emb|CAE20019.1| conserved hypothetical protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986]
(336 aa)

Score: 144 bits (363), Expect: 6.56607e-33
Length: 350, Idn/Pos/Gap = 103/161/77 (29%/46%/22%)

Query: 152 SGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAERRWRWT 211
           S  W KLICGAS  ++  I  L+  Y+ AG D +D AA+ ++V+A  +G+  A++ +   
Sbjct:  15 SDKWVKLICGASNEDIVAIEDLSAIYSAAGVDYIDVAADESIVEAARNGIKWAKKLYG--  72

Query: 212 LTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCAQLCP 271
                            A P +M+SI+D + + HFRKA+   D       CP PC ++CP
Sbjct:  73 -----------------ASPGLMISISDGK-DIHFRKAKF--DPLKCPSNCPRPCERICP 112

Query: 272 ADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVMALVRNY 331
             A+               G+   +CYGCGRCI +CP +LI  +  K +   +   ++  
Sbjct: 113 TFAIDYS------------GVKENKCYGCGRCINSCPLNLISEYEYKLSNNDLPKTLQTI 160

Query: 332 PIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAIS------MPEPND-----WSVF 380
             DAVE+HT     +SF  +  + I +T    +K I++S         P D     W  +
Sbjct: 161 KPDAVEIHTEINRLDSFIQV--ANILKTSGIELKKISVSCGLNQSQKGPKDLLKALWDRY 218

Query: 381 EYIARLVYGAHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSL 440
           E +                  P        L+WQ DG+PM+GDL AP+T + TV+   ++
Sbjct: 219 EILVE-------------HNVP--------LIWQLDGRPMSGDL-APSTGKDTVKLWNNI 256

Query: 441 AEYFRRNPHLLAARGFIQCAGGTNAHTIPLLEGVDGVHGVAYGGYARRLV 490
             +           G IQ AGGTN  T   L+  +   G+A+G  AR+++
Sbjct: 257 GSHL--------PPGLIQLAGGTNGKTHEFLKINNFPDGIAFGSSARKIM 298



gb|AAQ00758.1| Fe-S cluster containing protein [Prochlorococcus marinus subsp. marinus str. CCMP1375]
ref|NP_876105.1| Fe-S cluster containing protein [Prochlorococcus marinus subsp. marinus str. CCMP1375]
(331 aa)

Score: 139 bits (350), Expect: 1.95942e-31
Length: 341, Idn/Pos/Gap = 111/167/54 (32%/48%/15%)

Query: 150 LESGTWFKLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAERRWR 209
           +  GTW KLICGAS +++T I+ L   YA AG +C+D AA+ AVV A  +G+  A+    
Sbjct:   1 MRRGTWVKLICGASNDDLTSISDLCSVYAAAGVNCIDIAADIAVVAAAREGITWAK----  56

Query: 210 WTLTSDSSCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCAQL 269
                       D L     +PW+M+S++D + + HFRKA  + +      +C  PC ++
Sbjct:  57 ------------DNLG---IKPWLMISLSDGK-DIHFRKA--YFNPKVCPKECSRPCEKV  98

Query: 270 CPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVMALVR 329
           CP +A+               GI    CYGCGRCIPACP  LI+   +    Q    L+ 
Sbjct:  99 CPTNAIN-----------PTLGIIQDLCYGCGRCIPACPLELIQEKDNLLRIQDFGNLIS 147

Query: 330 NYPIDAVEVHTRDPLSESFAALWYSEIGRTLRATMKLIAISMPEPNDWSVFEYIARLVYG 389
               DA+E+HT     ++F      E+ ++ +  +K +A+S          + +++ ++ 
Sbjct: 148 KAKPDAIEIHTAPGRIKAFEQS-VKEVVKS-KVQLKRVAVSCGLEGHGITKDQLSQELWS 205

Query: 390 AHVDESGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYFRRNPH 449
            H        E        PI  WQ DG+PM+GD+G     R T + A  L E      H
Sbjct: 206 RH--------ECLCRYNQKPI--WQLDGRPMSGDIG-----RGTAKAAILLLEKM----H 246

Query: 450 LLAARGFIQCAGGTNAHTIPLLEGVDGVHGVAYGGYARRLV 490
            +A  G IQ AGGTN  TI  L+    + G+A+GG AR+L+
Sbjct: 247 SIAPPGPIQLAGGTNEQTILHLQKNHRLAGIAFGGMARKLI 287



emb|CAE21905.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]
ref|NP_895557.1| hypothetical protein PMT1730 [Prochlorococcus marinus str. MIT 9313]
(323 aa)

Score: 134 bits (338), Expect: 5.65532e-30
Length: 348, Idn/Pos/Gap = 123/165/58 (35%/47%/16%)

Query: 157 KLICGASFNEVTEIAPLTRDYALAGADCVDCAAEPAVVQAVLDGLDEAERRWRWTLTSDS 216
           KLICGAS  ++  I  L   +A AG  CVD AA+ AVV+A   GLD  + R         
Sbjct:   2 KLICGASNQDLLAITDLCAVFAAAGIHCVDVAADAAVVRAARQGLDWVQAR---------  52

Query: 217 SCARPDRLTKSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCAQLCPADALT 276
                     S  RPW+MVSI+D + + HFRKA     A  P   C  PC   CPA+A+ 
Sbjct:  53 ----------SGFRPWLMVSISDGK-DAHFRKAWFD-PARCPS-DCSRPCQHSCPAEAIG  99

Query: 277 LPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVMALVRNYPIDAV 336
                         G+  +RCYGCGRC+P CP  LI+ H  +   +    L+     DAV
Sbjct: 100 EQG-----------GVQLSRCYGCGRCLPTCPLGLIDEHDRRLELKDFGPLLAELHPDAV 148

Query: 337 EVHTRDPLSESFAALWYSEIGRTLRATMKL--IAISMPEPNDWSVFEYIARLVYGAHVDE 394
           E+HT    +E+F     S +   + A + L  I +S          E +A  ++  +V  
Sbjct: 149 EIHTAPGRAEAFE----STVAELMSAQVPLQRIGVSCGLEGHGLTVEALASELWQRYV-- 202

Query: 395 SGTVQEAPATPPSTPILLWQCDGKPMTGDLGAPATTRATVRYATSLAEYFRRNPHLLAAR 454
              ++ +   P      LWQ DG+PM+GD+G+      T R A +L    R     LA  
Sbjct: 203 --CLRRSGQRP------LWQLDGRPMSGDIGS-----GTARVAIALWRKLRP----LAPP 245

Query: 455 GFIQCAGGTNAHTIPLLEGVDGVHGVAYGGYARRLVATGGYEAAQRLV 502
           G +Q AGGTNAHTI  L    G  G+A+GG ARRL+     EA  R V
Sbjct: 246 GPLQLAGGTNAHTITYLSSEHGPAGIAFGGMARRLLQPWLLEAQARHV 293



emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus maripaludis S2]
ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus maripaludis S2]
(397 aa)

Score: 49 bits (116), Expect: 0.000331279
Length: 99, Idn/Pos/Gap = 27/44/1 (27%/44%/1%)

Query: 247 RKARVHVDAHAPCWQCPAPCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPA 306
           RK     +    C +C A C Q CP DAL +     N  +++    S   C  CG+CI  
Sbjct: 298 RKKTEKANEFKMCIRCGA-CVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIET 356

Query: 307 CPYHLIETHSSKQTPQQVMALVRNYPIDAVEVHTRDPLS 345
           CPY +++     + P +   ++    I+A +   +  LS
Sbjct: 357 CPYDMLKLTGKSEKPLEGFCVMCLKCIEACDKAKKSALS 395



emb|CAF31019.1| polyferredoxin [Methanococcus maripaludis S2]
ref|NP_988583.1| polyferredoxin [Methanococcus maripaludis S2]
(393 aa)

Score: 48 bits (113), Expect: 0.00066215
Length: 80, Idn/Pos/Gap = 22/42/3 (27%/52%/3%)

Query: 246 FRKARVHVDAHAPCWQCPAPCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIP 305
           FRK  V  D    C  C A C + CP+DA+++    +   +  +F   S  C  CG C+ 
Sbjct:  36 FRKIPVIFDLPEKCISCSA-CKESCPSDAISMEFNEEFKKEMPVFDAGS--CINCGNCVE  92

Query: 306 ACPYHLIETHSSKQTPQQVM 325
           +CP +++E  + ++  ++++
Sbjct:  93 SCPTNVLEMGTLRKEAKELL 112



emb|CAB49319.1| Electron transport protein, containing 4Fe-4S binding domain [Pyrococcus abyssi GE5]
ref|NP_126088.1| electron transport protein [Pyrococcus abyssi GE5]
pir||H75154 electron transport protein PAB2084 - Pyrococcus abyssi  (strain Orsay)
(166 aa)

Score: 46 bits (109), Expect: 0.00174301
Length: 64, Idn/Pos/Gap = 21/32/9 (32%/50%/14%)

Query: 253 VDAHAPCWQC-PAPCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHL 311
           +D    C QC PAPC + CP  A+          +  +  +S+  C GCG C+ ACP+  
Sbjct:  47 MDVPVVCRQCDPAPCMEACPTGAIK--------RENGVLVVSAEECTGCGECVRACPFGA  98

Query: 312 IETH 315
           ++ H
Sbjct:  99 VKLH 102



ref|NP_418030.1| putative oxidoreductase, Fe-S protein [Escherichia coli K12]
gb|AAC76597.1| orf, hypothetical protein; putative oxidoreductase, Fe-S protein [Escherichia coli K12]
sp|P56256|YSAA_ECOLI Putative electron transport protein ysaA
(157 aa)

Score: 46 bits (109), Expect: 0.00175761
Length: 91, Idn/Pos/Gap = 30/45/10 (32%/49%/10%)

Query: 236 SITDDEMEPHFRKARVHVDAHA-PCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGIS 293
           +++ DE     R  + H    A  C QC  APCA +CP DA++            IF + 
Sbjct:  34 ALSPDEFISRIRVIKDHCWTTAVACHQCEDAPCANVCPVDAISR-------EHGHIF-VE  85

Query: 294 STRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
            TRC GC  C+ ACP+  +E  SS++  + +
Sbjct:  86 QTRCIGCKSCMLACPFGAMEVVSSRKKARAI 116



gb|AAG58722.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
dbj|BAB37879.1| hypothetical protein [Escherichia coli O157:H7]
ref|NP_312483.1| hypothetical protein ECs4456 [Escherichia coli O157:H7]
pir||H91185 hypothetical protein ECs4456 [imported] - Escherichia coli  (strain O157:H7, substrain RIMD 0509952)
pir||F86032 hypothetical protein yiaI [imported] - Escherichia coli  (strain O157:H7, substrain EDL933)
ref|NP_290158.1| hypothetical protein Z4998 [Escherichia coli O157:H7 EDL933]
(157 aa)

Score: 46 bits (108), Expect: 0.00220172
Length: 91, Idn/Pos/Gap = 30/45/10 (32%/49%/10%)

Query: 236 SITDDEMEPHFRKARVHVDAHA-PCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGIS 293
           +++ DE     R  + H    A  C QC  APCA +CP DA++            IF + 
Sbjct:  34 ALSPDEFISRIRVIKDHSWTTAVACHQCEDAPCANVCPVDAISR-------EHGHIF-VE  85

Query: 294 STRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
            TRC GC  C+ ACP+  +E  SS++  + +
Sbjct:  86 QTRCIGCKSCMLACPFGAMEVVSSRKKARAI 116



ref|NP_614284.1| Ferredoxin [Methanopyrus kandleri AV19]
gb|AAM02214.1| Ferredoxin [Methanopyrus kandleri AV19]
(299 aa)

Score: 46 bits (108), Expect: 0.00241336
Length: 121, Idn/Pos/Gap = 35/52/13 (28%/42%/10%)

Query: 226 KSFARPWIMVSITDDEMEPHFRKARVHVDAHAPCWQCPAPCAQLCPADALT----LPATA 281
           K+    W  V +  D ME    +    +D    C  C   CAQ+CP  A+T    +P  +
Sbjct: 175 KAEENEWSPVYVDPDTMELKQGRKVAKIDPEK-CTGCTL-CAQVCPWGAITAARDVPVQS 232

Query: 282 KNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSSKQTPQQVMALV---RNYPIDAVEV 338
           + V       I   +C GCG C   CP  LIE     + P++  A     R  P+DA+ +
Sbjct: 233 REVKN----EIDEDKCVGCGVCAEVCPGDLIEVDGVAKVPEKCPACKLCERACPVDAISI 288

Query: 339 H 339
           +
Sbjct: 289 N 289



ref|NP_709358.2| hypothetical protein SF3617 [Shigella flexneri 2a str. 301]
gb|AAN45065.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
ref|NP_839313.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
gb|AAP19124.1| hypothetical protein S4152 [Shigella flexneri 2a str. 2457T]
(157 aa)

Score: 46 bits (108), Expect: 0.00268985
Length: 67, Idn/Pos/Gap = 25/36/9 (37%/53%/13%)

Query: 259 CWQCP-APCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHLIETHSS 317
           C QC  APCA +CP DA++            IF +  TRC GC  C+ ACP+  +E  SS
Sbjct:  58 CHQCEDAPCANVCPVDAISR-------EHGHIF-VEQTRCIGCKSCMLACPFGAMEVVSS 109

Query: 318 KQTPQQV 324
           ++  + +
Sbjct: 110 RKKARAI 116



emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54]
ref|YP_066115.1| similar to hydrogenase [Desulfotalea psychrophila LSv54]
(483 aa)

Score: 46 bits (108), Expect: 0.00271239
Length: 64, Idn/Pos/Gap = 22/30/9 (34%/46%/14%)

Query: 250 RVHVDAHAPCWQCPA-PCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACP 308
           R H +    C  C A  C Q CP DA+T+     +++        S  C  CG+C+  CP
Sbjct: 110 RTHYEVTNACQGCLAQACIQSCPKDAITMVQGKSHID--------SNLCINCGKCLKVCP 161

Query: 309 YHLI 312
           YH I
Sbjct: 162 YHAI 165



ref|NP_417362.3| putative oxidoreductase, Fe-S protein [Escherichia coli K12]
gb|AAC75924.1| putative oxidoreductase, Fe-S subunit; putative oxidoreductase, Fe-S protein [Escherichia coli K12]
pir||F65072 hypothetical protein b2886 - Escherichia coli (strain K-12)
gb|AAA83067.1| ORF_f163
(163 aa)

Score: 45 bits (107), Expect: 0.00289962
Length: 89, Idn/Pos/Gap = 30/41/11 (33%/46%/12%)

Query: 240 DEMEPHFRKARV-HVDAHAPCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGISSTRC 297
           D   P  +  R+  + A   C QC  APC   CP  ALT+          Q+   +S RC
Sbjct:  36 DVFLPRLKVQRLDSISAPVMCHQCENAPCVGACPVGALTMGE--------QVVQTNSARC  87

Query: 298 YGCGRCIPACPYHLIETHS-SKQTPQQVM 325
            GC  C+ ACP+ +I   S    T QQ++
Sbjct:  88 IGCQSCVSACPFGMITIQSLPGDTRQQIV 116



ref|YP_049355.1| electron transport protein [Erwinia carotovora subsp. atroseptica SCRI1043]
emb|CAG74159.1| electron transport protein [Erwinia carotovora subsp. atroseptica SCRI1043]
(181 aa)

Score: 45 bits (107), Expect: 0.00292392
Length: 83, Idn/Pos/Gap = 28/38/10 (33%/45%/12%)

Query: 236 SITDDEMEPHFRKAR-VHVDAHAPCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGIS 293
           S+T +   P     +  +V     C QC  APCA +CP  A+T      +V Q       
Sbjct:  34 SLTQENFLPRIHVIKGANVSTAVMCRQCEDAPCANVCPNGAITREKDFIHVQQ-------  86

Query: 294 STRCYGCGRCIPACPYHLIETHS 316
             RC GC  C+ ACPY ++E  S
Sbjct:  87 -ARCIGCKTCVVACPYGVMEVVS 108



sp|Q46819|YGFS_ECOLI Putative electron transport protein ygfS
(162 aa)

Score: 45 bits (107), Expect: 0.00323183
Length: 89, Idn/Pos/Gap = 30/41/11 (33%/46%/12%)

Query: 240 DEMEPHFRKARV-HVDAHAPCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGISSTRC 297
           D   P  +  R+  + A   C QC  APC   CP  ALT+          Q+   +S RC
Sbjct:  35 DVFLPRLKVQRLDSISAPVMCHQCENAPCVGACPVGALTMGE--------QVVQTNSARC  86

Query: 298 YGCGRCIPACPYHLIETHS-SKQTPQQVM 325
            GC  C+ ACP+ +I   S    T QQ++
Sbjct:  87 IGCQSCVSACPFGMITIQSLPGDTRQQIV 115



gb|AAG58014.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 EDL933]
dbj|BAB37181.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7]
ref|NP_311785.1| putative oxidoreductase Fe-S subunit [Escherichia coli O157:H7]
pir||B85944 probable oxidoreductase, Fe-S subunit ygfS [imported] - Escherichia coli (strain O157:H7, substrain EDL933)
pir||F91098 probable oxidoreductase Fe-S subunit ECs3758 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952)
ref|NP_289455.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 EDL933]
(131 aa)

Score: 45 bits (106), Expect: 0.00372435
Length: 75, Idn/Pos/Gap = 27/36/10 (36%/48%/13%)

Query: 253 VDAHAPCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHL 311
           + A   C QC  APC   CP  ALT+          Q+   +S RC GC  C+ ACP+ +
Sbjct:  18 ISAPVMCHQCENAPCVGACPVGALTMGE--------QVVQTNSARCIGCQSCVSACPFGM  69

Query: 312 IETHS-SKQTPQQVM 325
           I   S    T QQ++
Sbjct:  70 ITIQSLPGDTRQQIV  84



ref|NP_755338.1| Putative electron transport protein ygfS [Escherichia coli CFT073]
gb|AAN81908.1| Putative electron transport protein ygfS [Escherichia coli CFT073]
(163 aa)

Score: 45 bits (106), Expect: 0.00425627
Length: 75, Idn/Pos/Gap = 27/36/10 (36%/48%/13%)

Query: 253 VDAHAPCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGISSTRCYGCGRCIPACPYHL 311
           + A   C QC  APC   CP  ALT+          Q+   +S RC GC  C+ ACP+ +
Sbjct:  50 ISAPVMCHQCENAPCVGACPVGALTMGE--------QVVQANSARCIGCQSCVSACPFGM 101

Query: 312 IETHS-SKQTPQQVM 325
           I   S    T QQ++
Sbjct: 102 ITIQSLPGDTRQQIV 116



ref|NP_756256.1| Putative electron transport protein ysaA [Escherichia coli CFT073]
gb|AAN82830.1| Putative electron transport protein ysaA [Escherichia coli CFT073]
(159 aa)

Score: 45 bits (106), Expect: 0.00443759
Length: 91, Idn/Pos/Gap = 29/45/10 (31%/49%/10%)

Query: 236 SITDDEMEPHFRKARVHVDAHA-PCWQCP-APCAQLCPADALTLPATAKNVNQFQIFGIS 293
           +++ DE     R  + H    A  C QC  APCA +CP DA++            IF + 
Sbjct:  36 ALSPDEFISRIRVIKDHSWTTAVACHQCEDAPCANVCPVDAISR-------EHGHIF-VE  87

Query: 294 STRCYGCGRCIPACPYHLIETHSSKQTPQQV 324
            +RC GC  C+ ACP+  +E  SS++  + +
Sbjct:  88 QSRCIGCKSCMLACPFGAMEVVSSRKKARAI 118